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MacroAPE 1083:9-GGGGTTT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;3.541;1179.153;2354.765;3.541!2;3.541;888.791;2620.34;28.328!3;3.541;3.541;3509.131;24.787!4;3.541;3.541;2064.403;1469.515!5;775.479;3.541;3...")
 
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G5;0.0427079!10534-107G3;0.0458264!10429-106D6;0.137913!10464-106H5;0.010368!10827-111C8;0.0210722!10789-110H6;0.236829!10828-111C9;0.394767!10788-110H5;0.349198!10792-110H9;0.249785!10765-110E9;0.632523!10829-111D1;0.396097!10830-111D2;0.283037!10831-111D3;0.346059!10832-111D4;0.411472!10833-111D5;0.252969!10764-110E8;0.13404!10770-110F5;0.385768!10399-106A3;0.443064!10400-106A4;0.205395!10405-106A9;0.285114!10834-111D6;0.289033!10835-111D7;0.376346!10836-111D8;0.150961!10837-111D9;0.00506603!10699-109G6;0.29716!10802-111A1;0.177243!10796-110I4;0.0129905!10010-101C1;0.763463!10810-111A9;0.143312!10421-106C7;0.0175532!10708-109H6;0.131618!12235-129G3;0.192174!12236-129G4;0.93608!12237-129G5;0.918838!10167-103B5;0.750869!10151-102I7;0.312519!10428-106D5;0.436873!10795-110I3;0.9141!10805-111A4;0.13335!10052-101G7;0.248061!10189-103D9;0.340733!10589-108D4;0.777974!10425-106D2;0.909182!10427-106D4;0.930422!10702-109G9;0.113295!10432-106D9;0.00173828!10496-107C1;0.0595474!10718-109I7;0.315947!10011-101C2;0.269889!10053-101G8;0.0890871!10686-109F2;0.604565!10084-102B3;0.446888!10012-101C3;0.239297!10085-102B4;0.336625!10482-107A5;0.541597!10419-106C5;0.0750044!10080-102A8;0.36518!10760-110E4;0.398541!10709-109H7;0.0027222!10710-109H8;0.3453!10703-109H1;0.0717746!10719-109I8;0.382452!10642-109A3;0.179788!10177-103C6;0.280272!10164-103B2;0.472327!10173-103C2;0.484591!10166-103B4;0.777918!10083-102B2;0.732587!10188-103D8;0.580515!10552-107I3;0.470144!10553-107I4;0.73054!10013-101C4;0.620065!10536-107G5;0.163316!10618-108G6;0.710463!10423-106C9;0.0407293!10785-110H2;0.273335!12238-129G6;0.228945!12239-129G7;0.433567!12240-129G8;0.308012!10416-106C2;0.197364!10801-110I9;0.0900386!10766-110F1;0.284342!10824-111C5;0.153587!10825-111C6;0.337364!10826-111C7;0.304281!10454-106G4;0.30335!10409-106B4;0.645917!10638-108I8;0.0847699!10636-108I6;0.146681!10513-107D9;0.0253337!10420-106C6;0.429149!10082-102B1;0.91786!10014-101C5;0.574617!10070-101I7;0.0906347!10452-106G2;0.616299!10453-106G3;2.26449e-05!10449-106F8;0.00247553!10042-101F6;0.00413802!10069-101I6;0.305245!10193-103E4;0.0542777!10631-108I1;0.396035!10438-106E6;0.18409!10488-107B2;0.264906!10196-103E7;0.557164!10071-101I8;0.18306!10071-101I8;0.76129!10041-101F5;0.610438!10451-106G1;0.322732!10450-106F9;0.00378282!10604-108F1;0.114975!10605-108F2;0.0178994!10606-108F3;0.0885603!10603-108E9;0.0215202!10497-107C2;0.00312303!10448-106F7;0.123587!10643-109A4;0.213266!10426-106D3;0.917149!10431-106D8;0.23466!10197-103E8;0.210878!10443-106F2;0.0125349!10815-111B5;0.471175!10816-111B6;0.0838726!10817-111B7;0.0377369!10015-101C6;0.076161!10410-106B5;0.0936905!10054-101G9;0.559053!10758-110E2;0.403264!10711-109H9;0.75982!10040-101F4;0.117274!10470-106I2;0.302389!10415-106C1;0.0103126!10198-103E9;0.271385!10614-108G2;0.0833815!10612-108F9;0.219423!10549-107H9;0.0714232!10615-108G3;0.0289868!10487-107B1;0.139458!10433-106E1;0.0978935!10688-109F4;0.0473666!10444-106F3;0.139124!10444-106F3;0.188393!10485-107A8;0.201065!10413-106B8;0.415144!10175-103C4;0.615824!10161-103A8;0.361267!12131-128D7;0.374146!10624-108H3;0.279834!10712-109I1;0.0315763!10205-103F7;0.00499682!10206-103F8;0.275772!10207-103F9;0.0378418!10050-101G5;0.849573!10051-101G6;0.381594!10016-101C7;0.0898167!10046-101G1;0.164874!10778-110G4;0.811058!10633-108I3;0.03303!10818-111B8;0.0754226!10819-111B9;0.541807!10820-111C1;0.537977!10484-107A7;0.529743!10808-111A7;0.596427!10169-103B7;0.238971!10153-102I9;0.33929!13425-144D5;0.47729!13433-144E4;0.154168!13437-144E8;0.189343!11904-125F5;0.225079!11905-125F6;0.0102108!10039-101F3;0.0480029!10791-110H8;0.295019!10017-101C8;0.94654!10045-101F9;0.102587!10509-107D5;0.904479!10839-111E2;0.946962!10692-109F8;0.481485!10079-102A7;0.0734804!10078-102A6;0.0287513!10721-110A1;0.0589582!10569-108B2;0.565611!10570-108B3;0.0469643!10571-108B4;0.0490645!10647-109A8;0.144737!10752-110D5;0.00624394!10782-110G8;0.211778!10726-110A6;0.0101863!10018-101C9;0.0030354!10086-102B5;0.00469493!10182-103D2;0.460839!10165-103B3;0.801002!10499-107C4;0.623596!10408-106B3;0.587689!10019-101D1;0.00495083!10068-101I5;0.657372!10075-102A3;0.738456!10077-102A5;0.266521!10727-110A7;0.294683!10775-110G1;0.0769796!10412-106B7;0.0091304!12231-129F8;0.0411402!12232-129F9;0.589792!12233-129G1;0.526349!12234-129G2;0.551585!10414-106B9;0.540731!10170-103B8;0.336505!10183-103D3;0.551015!10150-102I6;0.366215!10174-103C3;0.413498!10155-103A2;0.437135!10038-101F2;0.574077!10838-111E1;0.504251!10759-110E3;0.00499036!10514-107E1;0.146939!10465-106H6;0.00110714!10691-109F7;0.00393597!10843-111E6;0.707009!10844-111E7;0.232532!11747-123G1;0.229988!11748-123G2;0.0153889!11749-123G3;0.0172235!11750-123G4;0.00599829!11751-123G5;0.00341997!11840-124H4;0.000139841!11752-123G6;0.000687239!11753-123G7;0.0624305!11754-123G8;0.00693455!11755-123G9;0.152793!11756-123H1;0.809282!11833-124G6;0.750693!11760-123H5;0.277513!11836-124G9;0.611652!11758-123H3;0.188929!11835-124G8;0.247354!11762-123H7;0.215219!11838-124H2;0.515641!11757-123H2;0.175281!11759-123H4;0.748419!11761-123H6;0.365585!11842-124H6;0.389912!11837-124H1;0.0870994!10568-108B1;0.265932!13230-141I8;0.414233!13231-141I9;0.00276531!10696-109G3;0.00674743!10493-107B7;0.816892!10494-107B8;0.114456!10850-111F4;0.0168581!10851-111F5;0.0858264!10852-111F6;0.804219!10853-111F7;0.330898!10854-111F8;0.516842!10855-111F9;0.555007!10856-111G1;0.123161!10847-111F1;0.98606!10846-111E9;0.114565!10848-111F2;0.149809!10845-111E8;0.257267!10857-111G2;0.183728!10858-111G3;0.141059!10156-103A3;0.862396!11901-125F2;0.467241!11902-125F3;0.0604795!11903-125F4;0.125909!10689-109F5;0.142328!10648-109A9;0.941002!10784-110H1;0.0899034!10744-110C6;0.106222!10772-110F7;0.390226!10474-106I6;0.173617!10600-108E6;0.793719!10684-109E9;0.655676!12226-129F3;0.733796!12227-129F4;0.479255!10508-107D4;0.685652!10539-107G8;0.236426!10607-108F4;0.0252661!10555-107I6;0.4603!10774-110F9;0.16003!10637-108I7;0.724585!10663-109C6;0.352422!10728-110A8;0.286987!10729-110A9;0.114165!10430-106D7;0.0326058!10730-110B1;0.0565722!10813-111B3;0.476461!10812-111B2;0.183417!10037-101F1;0.21364!10172-103C1;0.305533!10163-103B1;0.420953!10076-102A4;0.571106!10073-102A1;0.345375!10036-101E9;0.590743!10195-103E6;0.401623!10277-104E7;0.309709!10434-106E2;0.293621!10550-107I1;0.48185!10545-107H5;0.173311!10544-107H4;0.539252!10704-109H2;0.0886827!10510-107D6;0.69054!10558-107I9;0.000950751!10020-101D2;0.974835!10732-110B3;0.164462!10049-101G4;0.976808!10698-109G5;0.072632!10437-106E5;0.127534!10417-106C3;0.105401!10035-101E8;0.0233745!10171-103B9;0.349333!10157-103A4;0.40147!10034-101E7;0.486623!10072-101I9;0.34851!10199-103F1;0.823636!10200-103F2;0.00857574!10697-109G4;0.0384368!10723-110A3;0.862241!10179-103C8;0.143551!10160-103A7;0.835734!10180-103C9;0.956564!10162-103A9;0.238129!10021-101D3;0.51289!10840-111E3;0.646164!10706-109H4;0.0556651!10033-101E6;0.454202!10032-101E5;0.594606!10490-107B4;0.314253!10439-106E7;0.0407289!10022-101D4;0.139643!10176-103C5;0.114714!10469-106I1;0.576406!10067-101I4;0.00795525!10411-106B6;0.812819!10471-106I3;0.106219!10030-101E3;0.130914!10475-106I7;0.933231!10787-110H4;0.0145313!10477-106I9;0.088969!10695-109G2;0.05834!11771-123I7;0.797253!11772-123I8;0.811497!11773-123I9;0.479945!10093-102C3;0.753756!10442-106F1;0.0333503!10442-106F1;0.415084!10201-103F3;0.527308!10639-108I9;0.17046!11843-124H7;0.439664!11841-124H5;0.512898!10693-109F9;0.96242!10436-106E4;0.275707!10483-107A6;0.264183!10282-104F3;0.302674!10023-101D5;0.0268937!10066-101I3;0.147813!10065-101I2;0.371046!10800-110I8;0.0985499!10610-108F7;0.12285!10841-111E4;0.237678!10541-107H1;0.233714!10842-111E5;0.305181!10562-108A4;0.0602225!10024-101D6;0.454359!10064-101I1;0.182454!10609-108F6;0.615141!10048-101G3;0.255366!10781-110G7;0.0333188!10181-103D1;0.460993!10159-103A6;0.50385!10056-101H2;0.436087!10737-110B8;0.574766!10025-101D7;0.462244!10044-101F8;0.664139!10424-106D1;0.805557!10463-106H4;0.050187!10616-108G4;0.0701419!10486-107A9;0.271312!10062-101H8;0.973232!10202-103F4;0.859705!10158-103A5;0.0308181!10441-106E9;0.38977!10031-101E4;0.0827351!10063-101H9;0.326271!10063-101H9;0.707697!11763-123H8;0.265223!11765-123I1;0.0540577!11768-123I4;0.00322816!10807-111A6;8.1424e-05!10790-110H7;0.322336!10798-110I6;0.0976755!10786-110H3;0.236867!10591-108D6;0.0725166!10593-108D8;0.0296464!10590-108D5;0.0287471!10026-101D8;0.0348195!10096-102C6;0.0172869!10168-103B6;0.304352!10154-103A1;0.596146!10209-103G2;0.401588!10061-101H7;0.0884994!10027-101D9;0.439881!10043-101F7;0.0337754!10783-110G9;0.0912621!10028-101E1;0.306895!10060-101H6;0.0915038!10203-103F5;0.216592!10059-101H5;0.0467683!10047-101G2;0.0826958!10029-101E2;0.831129!10058-101H4;0.217611!10418-106C4;0.256462!10492-107B6;0.0592082!10694-109G1;0.532011!10797-110I5;0.103393!10057-101H3;0.449378!10100-102D1;0.0268768!10055-101H1;0.086809!10204-103F6;0.67403!10191-103E2;0.579963!10563-108A5;0.36205
|name=9-GGGGTTT,CNhs11958,BestGuess:REL_do_HM09(0.715499181166044),T:3541.0(67.28%),B:24463.4(56.33%),P:1e-58
|name=9-GGGGTTT,CNhs11958,BestGuess:REL_do_HM09(0.715499181166044),T:3541.0(67.28%),B:24463.4(56.33%),P:1e-58
|tomtom_result=dl_1#MA0022.1;0;6.5839e-06;0.00313394;0.00626787;7;GGGGTTT;GGGGTTTTTCCC;+!dl_2#MA0023.1;0;7.23075e-05;0.0344184;0.0344184;7;GGGGTTT;GGGGATTTCC;+!REL#MA0101.1;1;0.0010125;0.481949;0.321299;7;GGGGTTT;GGGGATTTCC;+!NDT80#MA0343.1;2;0.00290456;1.38257;0.691284;7;GGGGTTT;TTGCGTTTTTGTGGCCGGAAA;-!run::Bgb#MA0242.1;2;0.00713902;3.39817;1;7;GGGGTTT;TTGCGGTTA;-!AFT2#MA0270.1;0;0.0084194;4.00764;1;7;GGGGTTT;GGGGTGTG;-!RELA#MA0107.1;1;0.00856377;4.07636;1;7;GGGGTTT;GGGAATTTCC;+!NFKB1#MA0105.1;0;0.0104029;4.95178;1;7;GGGGTTT;GGGGATTCCCC;+!che-1#MA0260.1;-2;0.010685;5.08605;1;5;GGGGTTT;GGTTTC;-!NF-kappaB#MA0061.1;0;0.0115061;5.47689;1;7;GGGGTTT;GGGAATTTCC;+!TBP#MA0108.2;3;0.0139893;6.65893;1;7;GGGGTTT;CCCCGCCTTTTATAC;-!TBP#MA0108.2;3;0.0139893;6.65893;1;7;GGGGTTT;CCCCGCCTTTTATAC;-!RUNX1#MA0002.2;4;0.0165428;7.87439;1;7;GGGGTTT;GTCTGTGGTTT;+!Ddit3::Cebpa#MA0019.1;-1;0.0205405;9.77726;1;6;GGGGTTT;GGGATTGCATCT;-
}}
}}

Latest revision as of 12:38, 7 September 2012

Full Name: 9-GGGGTTT,CNhs11958,BestGuess:REL_do_HM09(0.715499181166044),T:3541.0(67.28%),B:24463.4(56.33%),P:1e-58

Motif matrix
POACGT
13.5411179.1532354.7653.541
23.541888.7912620.3428.328
33.5413.5413509.13124.787
43.5413.5412064.4031469.515
5775.4793.5413.5412758.439
63.5413.5413.5413530.377
73.5413.5413.5413530.377

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
dl_1#MA0022.106.5839e-060.003133940.006267877GGGGTTTGGGGTTTTTCCC+
dl_2#MA0023.107.23075e-050.03441840.03441847GGGGTTTGGGGATTTCC+
REL#MA0101.110.00101250.4819490.3212997GGGGTTTGGGGATTTCC+
NDT80#MA0343.120.002904561.382570.6912847GGGGTTTTTGCGTTTTTGTGGCCGGAAA-
run::Bgb#MA0242.120.007139023.3981717GGGGTTTTTGCGGTTA-
AFT2#MA0270.100.00841944.0076417GGGGTTTGGGGTGTG-
RELA#MA0107.110.008563774.0763617GGGGTTTGGGAATTTCC+
NFKB1#MA0105.100.01040294.9517817GGGGTTTGGGGATTCCCC+
che-1#MA0260.1-20.0106855.0860515GGGGTTTGGTTTC-
NF-kappaB#MA0061.100.01150615.4768917GGGGTTTGGGAATTTCC+
TBP#MA0108.230.01398936.6589317GGGGTTTCCCCGCCTTTTATAC-
TBP#MA0108.230.01398936.6589317GGGGTTTCCCCGCCTTTTATAC-
RUNX1#MA0002.240.01654287.8743917GGGGTTTGTCTGTGGTTT+
Ddit3::Cebpa#MA0019.1-10.02054059.7772616GGGGTTTGGGATTGCATCT-
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