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MacroAPE 1083:TBX5 HL1-Tbx5.biotin-ChIP-Seq/Homer: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;24783;63;4388;2336!2;5304;663;24530;1073!3;63;4515;26550;442!4;63;2620;63;28824!5;63;63;31381;63!6;5020;7135;2084;17331!7;505;15564;7293;820...")
 
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3924!10534-107G3;0.24685!10429-106D6;0.206579!10464-106H5;0.980844!10827-111C8;0.333116!10789-110H6;0.189821!10828-111C9;0.0628456!10788-110H5;0.0840174!10792-110H9;0.159591!10765-110E9;0.227013!10829-111D1;0.0836681!10830-111D2;0.246949!10831-111D3;0.342857!10832-111D4;0.100261!10833-111D5;0.0515421!10764-110E8;0.0669872!10770-110F5;0.744826!10399-106A3;0.339147!10400-106A4;0.381291!10405-106A9;0.485489!10834-111D6;0.54731!10835-111D7;0.252141!10836-111D8;0.231817!10837-111D9;0.415793!10699-109G6;0.0890151!10802-111A1;0.0159702!10796-110I4;0.0436189!10010-101C1;0.645675!10810-111A9;0.185243!10421-106C7;0.00565341!10708-109H6;0.197506!12235-129G3;0.0678289!12236-129G4;0.0454551!12237-129G5;0.214983!10167-103B5;0.0194163!10151-102I7;0.150423!10428-106D5;0.216466!10795-110I3;0.746312!10805-111A4;0.263289!10052-101G7;0.0560076!10189-103D9;0.0701516!10589-108D4;0.033374!10425-106D2;0.49044!10427-106D4;0.60645!10702-109G9;0.560567!10432-106D9;0.545437!10496-107C1;0.857909!10718-109I7;0.261449!10011-101C2;0.0376306!10053-101G8;0.0283743!10686-109F2;0.998472!10084-102B3;0.323942!10012-101C3;0.354349!10085-102B4;0.159744!10482-107A5;0.326488!10419-106C5;0.190201!10080-102A8;0.111593!10760-110E4;0.137077!10709-109H7;0.91254!10710-109H8;0.308085!10703-109H1;0.423081!10719-109I8;0.801548!10642-109A3;0.0409799!10177-103C6;0.709231!10164-103B2;0.194186!10173-103C2;0.23579!10166-103B4;0.106959!10083-102B2;0.118078!10188-103D8;0.129335!10552-107I3;0.10353!10553-107I4;0.649305!10013-101C4;0.0130138!10536-107G5;0.148986!10618-108G6;0.925513!10423-106C9;0.438787!10785-110H2;0.894312!12238-129G6;0.310241!12239-129G7;0.0227012!12240-129G8;0.0589881!10416-106C2;0.0353099!10801-110I9;0.705397!10766-110F1;0.0179287!10824-111C5;0.0511993!10825-111C6;0.155702!10826-111C7;0.162966!10454-106G4;0.180585!10409-106B4;0.113343!10638-108I8;0.0459856!10636-108I6;0.26133!10513-107D9;0.68705!10420-106C6;0.811131!10082-102B1;0.853706!10014-101C5;0.0494145!10070-101I7;0.0278181!10452-106G2;0.0442798!10453-106G3;0.782384!10449-106F8;0.549823!10042-101F6;0.549964!10069-101I6;0.136464!10193-103E4;0.0651342!10631-108I1;0.165611!10438-106E6;0.256013!10488-107B2;0.0780867!10196-103E7;0.0869425!10071-101I8;0.0889318!10071-101I8;0.0497737!10041-101F5;0.448835!10451-106G1;0.188868!10450-106F9;0.730721!10604-108F1;0.854766!10605-108F2;0.51849!10606-108F3;0.147999!10603-108E9;0.514251!10497-107C2;0.249465!10448-106F7;0.252109!10643-109A4;0.000673165!10426-106D3;0.452934!10431-106D8;0.376087!10197-103E8;0.789617!10443-106F2;0.0321424!10815-111B5;0.359901!10816-111B6;0.312874!10817-111B7;0.621849!10015-101C6;0.336639!10410-106B5;0.00697743!10054-101G9;0.17468!10758-110E2;0.0313778!10711-109H9;0.0532616!10040-101F4;0.00578765!10470-106I2;0.150341!10415-106C1;0.079465!10198-103E9;0.74348!10614-108G2;0.0754339!10612-108F9;0.919685!10549-107H9;0.512924!10615-108G3;0.483879!10487-107B1;0.806411!10433-106E1;0.834777!10688-109F4;0.564833!10444-106F3;0.110023!10444-106F3;0.101922!10485-107A8;0.147045!10413-106B8;0.000791378!10175-103C4;0.618189!10161-103A8;0.179675!12131-128D7;0.191587!10624-108H3;0.35706!10712-109I1;0.440128!10205-103F7;0.251346!10206-103F8;0.0864869!10207-103F9;0.140949!10050-101G5;0.0815126!10051-101G6;0.00382454!10016-101C7;0.0371058!10046-101G1;0.0322389!10778-110G4;0.0584935!10633-108I3;0.898922!10818-111B8;0.264588!10819-111B9;0.118089!10820-111C1;0.07392!10484-107A7;0.122197!10808-111A7;0.805391!10169-103B7;0.166208!10153-102I9;0.15231!13425-144D5;0.207594!13433-144E4;0.845315!13437-144E8;0.445993!11904-125F5;0.590489!11905-125F6;0.0265296!10039-101F3;0.084538!10791-110H8;0.156029!10017-101C8;0.630001!10045-101F9;0.0829678!10509-107D5;0.104493!10839-111E2;0.36926!10692-109F8;0.94469!10079-102A7;0.311603!10078-102A6;0.0869337!10721-110A1;0.0238178!10569-108B2;0.0193281!10570-108B3;0.420713!10571-108B4;0.441507!10647-109A8;0.580193!10752-110D5;0.434493!10782-110G8;0.133706!10726-110A6;0.16052!10018-101C9;0.0119929!10086-102B5;0.947673!10182-103D2;0.811875!10165-103B3;0.179604!10499-107C4;0.119599!10408-106B3;0.682385!10019-101D1;0.746699!10068-101I5;0.00361082!10075-102A3;0.0211391!10077-102A5;0.0301325!10727-110A7;0.954752!10775-110G1;0.551446!10412-106B7;0.560714!12231-129F8;0.153598!12232-129F9;0.910968!12233-129G1;0.995032!12234-129G2;0.711659!10414-106B9;0.955501!10170-103B8;0.0668935!10183-103D3;0.158869!10150-102I6;0.228136!10174-103C3;0.180598!10155-103A2;0.0430298!10038-101F2;0.0734102!10838-111E1;0.0812842!10759-110E3;0.332907!10514-107E1;0.348912!10465-106H6;0.182897!10691-109F7;0.0166271!10843-111E6;0.0832463!10844-111E7;0.364546!11747-123G1;0.0747436!11748-123G2;0.144719!11749-123G3;0.214494!11750-123G4;0.182896!11751-123G5;0.798166!11840-124H4;0.43177!11752-123G6;0.915192!11753-123G7;0.805154!11754-123G8;0.203994!11755-123G9;0.102568!11756-123H1;0.193158!11833-124G6;0.446187!11760-123H5;0.276213!11836-124G9;0.109982!11758-123H3;0.359042!11835-124G8;0.808712!11762-123H7;0.914741!11838-124H2;0.560317!11757-123H2;0.544729!11759-123H4;0.947508!11761-123H6;0.224436!11842-124H6;0.61539!11837-124H1;0.313435!10568-108B1;0.630859!13230-141I8;0.528043!13231-141I9;0.469637!10696-109G3;0.441609!10493-107B7;0.794679!10494-107B8;0.325226!10850-111F4;0.279789!10851-111F5;0.184483!10852-111F6;0.0839741!10853-111F7;0.871315!10854-111F8;0.107771!10855-111F9;0.0502428!10856-111G1;0.192905!10847-111F1;0.0896885!10846-111E9;0.0680091!10848-111F2;0.00930043!10845-111E8;0.0284736!10857-111G2;0.833293!10858-111G3;0.0191247!10156-103A3;0.0207534!11901-125F2;0.229252!11902-125F3;0.169138!11903-125F4;0.230217!10689-109F5;0.221991!10648-109A9;0.415089!10784-110H1;0.00282426!10744-110C6;0.808145!10772-110F7;0.112314!10474-106I6;0.523425!10600-108E6;0.853716!10684-109E9;0.241614!12226-129F3;0.2391!12227-129F4;0.0364711!10508-107D4;0.00909563!10539-107G8;0.624459!10607-108F4;0.221429!10555-107I6;0.0456635!10774-110F9;0.342484!10637-108I7;0.00193576!10663-109C6;0.0932902!10728-110A8;0.0806858!10729-110A9;0.0666804!10430-106D7;0.502891!10730-110B1;0.361692!10813-111B3;0.232272!10812-111B2;0.68903!10037-101F1;0.154416!10172-103C1;0.155177!10163-103B1;0.16194!10076-102A4;0.190866!10073-102A1;0.242292!10036-101E9;0.599271!10195-103E6;0.18451!10277-104E7;0.171054!10434-106E2;0.101153!10550-107I1;0.356046!10545-107H5;0.540614!10544-107H4;0.423929!10704-109H2;0.754169!10510-107D6;0.0626128!10558-107I9;0.840344!10020-101D2;0.967367!10732-110B3;0.473589!10049-101G4;0.0748353!10698-109G5;0.0242196!10437-106E5;0.517455!10417-106C3;0.466034!10035-101E8;0.149329!10171-103B9;0.138537!10157-103A4;0.262013!10034-101E7;0.193131!10072-101I9;0.152796!10199-103F1;0.559248!10200-103F2;0.00523643!10697-109G4;0.0225617!10723-110A3;0.0994528!10179-103C8;0.226788!10160-103A7;0.151638!10180-103C9;0.430692!10162-103A9;0.00551436!10021-101D3;0.0206169!10840-111E3;0.00792385!10706-109H4;0.757949!10033-101E6;0.693448!10032-101E5;0.0916598!10490-107B4;0.161142!10439-106E7;0.549148!10022-101D4;0.254506!10176-103C5;0.0629654!10469-106I1;0.243417!10067-101I4;0.0684536!10411-106B6;0.529453!10471-106I3;0.546717!10030-101E3;0.900686!10475-106I7;0.218069!10787-110H4;0.183226!10477-106I9;0.126866!10695-109G2;0.876825!11771-123I7;0.311313!11772-123I8;0.591711!11773-123I9;0.0956069!10093-102C3;0.0146418!10442-106F1;0.00247359!10442-106F1;0.199508!10201-103F3;0.237839!10639-108I9;0.102703!11843-124H7;0.0625102!11841-124H5;0.0826514!10693-109F9;0.0331781!10436-106E4;0.604103!10483-107A6;0.193536!10282-104F3;0.325769!10023-101D5;0.0156974!10066-101I3;0.0356973!10065-101I2;0.264372!10800-110I8;0.014937!10610-108F7;0.127439!10841-111E4;0.709515!10541-107H1;0.062439!10842-111E5;0.0540157!10562-108A4;0.994727!10024-101D6;0.0758979!10064-101I1;0.0136172!10609-108F6;0.302821!10048-101G3;0.00617242!10781-110G7;0.389697!10181-103D1;0.0493999!10159-103A6;0.12211!10056-101H2;0.0907566!10737-110B8;0.144894!10025-101D7;0.920313!10044-101F8;0.571176!10424-106D1;0.417533!10463-106H4;0.449848!10616-108G4;0.128296!10486-107A9;0.432402!10062-101H8;0.748436!10202-103F4;0.013837!10158-103A5;0.0018323!10441-106E9;0.152725!10031-101E4;0.109235!10063-101H9;0.201763!10063-101H9;0.616014!11763-123H8;0.0635249!11765-123I1;0.337332!11768-123I4;0.537437!10807-111A6;0.402621!10790-110H7;0.596022!10798-110I6;0.463012!10786-110H3;0.286463!10591-108D6;0.285446!10593-108D8;0.235827!10590-108D5;0.0998051!10026-101D8;0.749602!10096-102C6;0.895224!10168-103B6;0.170697!10154-103A1;0.100047!10209-103G2;0.162662!10061-101H7;0.00208775!10027-101D9;0.0160972!10043-101F7;0.135741!10783-110G9;0.0355425!10028-101E1;0.501926!10060-101H6;0.00246332!10203-103F5;0.00807459!10059-101H5;0.000889623!10047-101G2;0.0042887!10029-101E2;0.000710739!10058-101H4;0.00122249!10418-106C4;0.010179!10492-107B6;0.216492!10694-109G1;0.296031!10797-110I5;0.379465!10057-101H3;0.464287!10100-102D1;0.0211255!10055-101H1;0.334394!10204-103F6;0.107826!10191-103E2;0.0777418!10563-108A5;0.0314493
|name=TBX5_HL1-Tbx5.biotin-ChIP-Seq/Homer
|name=TBX5_HL1-Tbx5.biotin-ChIP-Seq/Homer
|tomtom_result=T#MA0009.1;2;8.6482e-05;0.0411654;0.0823308;8;AGGTGTCA;CTAGGTGTGAA;+!sna#MA0086.1;1;0.000871822;0.414987;0.260506;5;AGGTGTCA;CAGGTG;+!CUP9#MA0288.1;1;0.00107702;0.512663;0.260506;8;AGGTGTCA;AATGTGTCA;-!ZEB1#MA0103.1;1;0.00109456;0.521012;0.260506;5;AGGTGTCA;CAGGTG;-!Macho-1#MA0118.1;1;0.00772703;3.67806;1;8;AGGTGTCA;TGGGGGGTC;+!AFT2#MA0270.1;1;0.00904183;4.30391;1;7;AGGTGTCA;GGGGTGTG;-!Six4#MA0204.1;-2;0.00950997;4.52675;1;6;AGGTGTCA;GTATCA;-!vis#MA0252.1;-2;0.00950997;4.52675;1;6;AGGTGTCA;CTGTCA;-!DOT6#MA0351.1;11;0.0101367;4.82508;1;8;AGGTGTCA;AGGATGCGATGAGGTGCAGAA;-!TOD6#MA0350.1;11;0.0113527;5.40387;1;8;AGGTGTCA;AAAACGCGATGAGCTGTGCCT;-!HAC1#MA0310.1;1;0.0128796;6.13067;1;7;AGGTGTCA;CACGTGTC;-!STB5#MA0392.1;0;0.0198067;9.42799;1;8;AGGTGTCA;CGGTGTTA;+
}}
}}

Latest revision as of 12:52, 7 September 2012

Full Name: TBX5_HL1-Tbx5.biotin-ChIP-Seq/Homer

Motif matrix
POACGT
1247836343882336
25304663245301073
363451526550442
46326206328824
563633138163
650207135208417331
75051556472938208
82266769541994009

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
T#MA0009.128.6482e-050.04116540.08233088AGGTGTCACTAGGTGTGAA+
sna#MA0086.110.0008718220.4149870.2605065AGGTGTCACAGGTG+
CUP9#MA0288.110.001077020.5126630.2605068AGGTGTCAAATGTGTCA-
ZEB1#MA0103.110.001094560.5210120.2605065AGGTGTCACAGGTG-
Macho-1#MA0118.110.007727033.6780618AGGTGTCATGGGGGGTC+
AFT2#MA0270.110.009041834.3039117AGGTGTCAGGGGTGTG-
Six4#MA0204.1-20.009509974.5267516AGGTGTCAGTATCA-
vis#MA0252.1-20.009509974.5267516AGGTGTCACTGTCA-
DOT6#MA0351.1110.01013674.8250818AGGTGTCAAGGATGCGATGAGGTGCAGAA-
TOD6#MA0350.1110.01135275.4038718AGGTGTCAAAAACGCGATGAGCTGTGCCT-
HAC1#MA0310.110.01287966.1306717AGGTGTCACACGTGTC-
STB5#MA0392.100.01980679.4279918AGGTGTCACGGTGTTA+
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:TBX5_HL1-Tbx5.biotin-ChIP-Seq/Homer&oldid=2133798"