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MacroAPE 1083:PLAG1 si: Difference between revisions

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A5;0.927363!12184-129A6;0.783823!10809-111A8;0.856002!10597-108E3;0.515899!10717-109I6;8.81771e-05!10455-106G5;0.0487019!10534-107G3;0.283431!10429-106D6;0.139392!10464-106H5;0.177487!10827-111C8;0.157086!10789-110H6;0.738432!10828-111C9;0.841196!10788-110H5;0.86679!10792-110H9;0.726053!10765-110E9;0.885507!10829-111D1;0.345937!10830-111D2;0.360931!10831-111D3;0.329277!10832-111D4;0.930804!10833-111D5;0.743852!10764-110E8;0.41293!10770-110F5;0.266394!10399-106A3;0.186437!10400-106A4;0.114546!10405-106A9;0.130007!10834-111D6;0.150603!10835-111D7;0.263872!10836-111D8;0.234071!10837-111D9;0.317028!10699-109G6;0.788797!10802-111A1;0.446953!10796-110I4;0.331966!10010-101C1;0.003091!10810-111A9;0.0173295!10421-106C7;0.0455864!10708-109H6;0.20485!12235-129G3;0.0163955!12236-129G4;0.273478!12237-129G5;0.372766!10167-103B5;0.0755552!10151-102I7;0.806633!10428-106D5;0.759312!10795-110I3;0.334867!10805-111A4;0.0989345!10052-101G7;0.0205228!10189-103D9;0.0234954!10589-108D4;0.101989!10425-106D2;0.000140882!10427-106D4;0.835797!10702-109G9;0.279905!10432-106D9;0.120962!10496-107C1;0.00212691!10718-109I7;0.00417398!10011-101C2;0.588253!10053-101G8;0.0225429!10686-109F2;0.936742!10084-102B3;0.0699781!10012-101C3;0.91141!10085-102B4;0.771462!10482-107A5;0.488923!10419-106C5;1.13181e-05!10080-102A8;0.000283875!10760-110E4;0.461255!10709-109H7;0.00302821!10710-109H8;0.000979434!10703-109H1;0.00195031!10719-109I8;0.0219644!10642-109A3;0.406965!10177-103C6;0.115888!10164-103B2;0.667276!10173-103C2;0.889887!10166-103B4;0.257119!10083-102B2;0.242661!10188-103D8;0.24558!10552-107I3;0.486333!10553-107I4;0.105041!10013-101C4;0.00649181!10536-107G5;0.0153584!10618-108G6;0.446724!10423-106C9;0.000572384!10785-110H2;0.0177755!12238-129G6;0.0152897!12239-129G7;0.675498!12240-129G8;0.111397!10416-106C2;0.870686!10801-110I9;0.526065!10766-110F1;0.137438!10824-111C5;0.42038!10825-111C6;0.757917!10826-111C7;0.636426!10454-106G4;0.450015!10409-106B4;0.419874!10638-108I8;0.99668!10636-108I6;0.0389866!10513-107D9;0.0413033!10420-106C6;0.0805996!10082-102B1;0.0875794!10014-101C5;0.550841!10070-101I7;0.104112!10452-106G2;0.0339467!10453-106G3;0.265225!10449-106F8;0.18815!10042-101F6;0.203995!10069-101I6;0.430512!10193-103E4;0.0223615!10631-108I1;0.561099!10438-106E6;0.255614!10488-107B2;0.000300033!10196-103E7;0.0121723!10071-101I8;0.118004!10071-101I8;0.0318906!10041-101F5;0.72678!10451-106G1;0.0024162!10450-106F9;0.0840859!10604-108F1;0.136703!10605-108F2;0.000103259!10606-108F3;0.00313871!10603-108E9;5.69655e-05!10497-107C2;0.000245456!10448-106F7;0.102379!10643-109A4;0.0413522!10426-106D3;0.0991001!10431-106D8;0.00463361!10197-103E8;0.000145199!10443-106F2;0.0149441!10815-111B5;0.063134!10816-111B6;0.00720681!10817-111B7;0.00321652!10015-101C6;0.00258993!10410-106B5;0.157586!10054-101G9;0.470642!10758-110E2;0.0148008!10711-109H9;0.000951916!10040-101F4;0.14833!10470-106I2;0.702323!10415-106C1;0.0150682!10198-103E9;0.324671!10614-108G2;0.0577721!10612-108F9;0.241284!10549-107H9;0.00969267!10615-108G3;0.0145306!10487-107B1;0.0269545!10433-106E1;0.0509086!10688-109F4;0.161983!10444-106F3;0.00011982!10444-106F3;0.234042!10485-107A8;0.332939!10413-106B8;0.79338!10175-103C4;0.685159!10161-103A8;0.55019!12131-128D7;0.835092!10624-108H3;0.0149364!10712-109I1;0.402419!10205-103F7;0.476569!10206-103F8;0.0216795!10207-103F9;0.0372504!10050-101G5;0.311536!10051-101G6;0.405311!10016-101C7;0.0640236!10046-101G1;0.11644!10778-110G4;0.0163461!10633-108I3;0.187581!10818-111B8;0.0467479!10819-111B9;0.0694203!10820-111C1;0.0905369!10484-107A7;0.0724764!10808-111A7;0.0244766!10169-103B7;0.165841!10153-102I9;0.835558!13425-144D5;0.941431!13433-144E4;0.712183!13437-144E8;0.422876!11904-125F5;0.642462!11905-125F6;0.222682!10039-101F3;0.0740991!10791-110H8;0.735902!10017-101C8;0.000151837!10045-101F9;0.383445!10509-107D5;0.0841866!10839-111E2;0.176483!10692-109F8;0.0596293!10079-102A7;0.00608023!10078-102A6;0.016409!10721-110A1;0.0424429!10569-108B2;0.0458679!10570-108B3;0.000521491!10571-108B4;0.00680547!10647-109A8;0.00131898!10752-110D5;0.0128543!10782-110G8;0.53013!10726-110A6;0.0503605!10018-101C9;0.875654!10086-102B5;0.429278!10182-103D2;0.0746391!10165-103B3;0.662124!10499-107C4;0.753625!10408-106B3;0.000428664!10019-101D1;0.000439942!10068-101I5;0.0668017!10075-102A3;0.00146342!10077-102A5;0.207596!10727-110A7;0.0213527!10775-110G1;0.318232!10412-106B7;0.192!12231-129F8;0.0272834!12232-129F9;0.620641!12233-129G1;0.104651!12234-129G2;0.113814!10414-106B9;0.205365!10170-103B8;0.00309507!10183-103D3;0.512312!10150-102I6;0.756882!10174-103C3;0.55181!10155-103A2;0.0462044!10038-101F2;0.233929!10838-111E1;0.189063!10759-110E3;0.218238!10514-107E1;0.00223033!10465-106H6;0.408526!10691-109F7;0.281385!10843-111E6;0.339568!10844-111E7;0.00243627!11747-123G1;0.00484271!11748-123G2;0.00335735!11749-123G3;0.00331373!11750-123G4;0.0303874!11751-123G5;0.0161914!11840-124H4;0.00362989!11752-123G6;0.000348492!11753-123G7;0.0436615!11754-123G8;0.106003!11755-123G9;0.00164927!11756-123H1;0.0506577!11833-124G6;0.247007!11760-123H5;0.21418!11836-124G9;0.0281897!11758-123H3;3.65866e-05!11835-124G8;0.102386!11762-123H7;0.0840493!11838-124H2;0.127723!11757-123H2;0.133223!11759-123H4;0.00395475!11761-123H6;0.0284083!11842-124H6;0.306446!11837-124H1;0.0909464!10568-108B1;0.140738!13230-141I8;0.775338!13231-141I9;0.000639061!10696-109G3;0.00259473!10493-107B7;0.471753!10494-107B8;0.0888278!10850-111F4;0.668365!10851-111F5;0.0652523!10852-111F6;0.026107!10853-111F7;0.895111!10854-111F8;0.0694121!10855-111F9;0.0225337!10856-111G1;0.0961543!10847-111F1;0.311547!10846-111E9;0.0695959!10848-111F2;0.0359622!10845-111E8;0.281189!10857-111G2;0.0195041!10858-111G3;0.230568!10156-103A3;0.195585!11901-125F2;0.52199!11902-125F3;0.315433!11903-125F4;0.0253741!10689-109F5;0.111251!10648-109A9;0.933528!10784-110H1;0.147593!10744-110C6;0.000431147!10772-110F7;0.360295!10474-106I6;0.22445!10600-108E6;0.230977!10684-109E9;0.130666!12226-129F3;0.606744!12227-129F4;0.0705337!10508-107D4;0.0653098!10539-107G8;0.13487!10607-108F4;0.846264!10555-107I6;0.677645!10774-110F9;0.628481!10637-108I7;0.595282!10663-109C6;0.741794!10728-110A8;0.905564!10729-110A9;0.0712552!10430-106D7;0.193213!10730-110B1;0.0478858!10813-111B3;0.13469!10812-111B2;0.043446!10037-101F1;0.00222839!10172-103C1;0.798156!10163-103B1;0.552904!10076-102A4;0.417083!10073-102A1;0.635509!10036-101E9;0.239193!10195-103E6;0.711715!10277-104E7;0.786177!10434-106E2;0.522306!10550-107I1;0.0034137!10545-107H5;0.00289941!10544-107H4;0.0765047!10704-109H2;0.000878472!10510-107D6;0.43898!10558-107I9;0.0672263!10020-101D2;0.818965!10732-110B3;0.00151142!10049-101G4;0.686907!10698-109G5;0.664272!10437-106E5;0.000197832!10417-106C3;0.300661!10035-101E8;0.0180038!10171-103B9;0.647218!10157-103A4;0.884896!10034-101E7;0.679611!10072-101I9;0.655192!10199-103F1;0.41104!10200-103F2;0.238391!10697-109G4;0.0204667!10723-110A3;0.745807!10179-103C8;0.0120679!10160-103A7;0.764789!10180-103C9;0.951203!10162-103A9;0.695498!10021-101D3;0.560278!10840-111E3;0.101749!10706-109H4;0.265079!10033-101E6;0.474833!10032-101E5;0.831037!10490-107B4;0.738419!10439-106E7;0.037667!10022-101D4;0.00371625!10176-103C5;0.0153855!10469-106I1;0.951179!10067-101I4;0.000561173!10411-106B6;0.118574!10471-106I3;0.846662!10030-101E3;0.663129!10475-106I7;0.0173647!10787-110H4;0.0153568!10477-106I9;0.956377!10695-109G2;0.785752!11771-123I7;0.0771768!11772-123I8;0.438625!11773-123I9;0.745661!10093-102C3;0.0403417!10442-106F1;0.296315!10442-106F1;0.0756443!10201-103F3;0.114322!10639-108I9;0.0287565!11843-124H7;0.169604!11841-124H5;0.139527!10693-109F9;0.0726919!10436-106E4;0.0236937!10483-107A6;0.0305921!10282-104F3;0.00124095!10023-101D5;0.712333!10066-101I3;0.121977!10065-101I2;0.00518481!10800-110I8;0.0137937!10610-108F7;0.0208313!10841-111E4;0.0822325!10541-107H1;0.428832!10842-111E5;0.0209591!10562-108A4;0.028636!10024-101D6;0.0420087!10064-101I1;0.310502!10609-108F6;0.0370109!10048-101G3;0.0180689!10781-110G7;0.0464408!10181-103D1;0.0196376!10159-103A6;0.0928183!10056-101H2;0.255403!10737-110B8;0.0078128!10025-101D7;0.917372!10044-101F8;0.0141617!10424-106D1;0.00628633!10463-106H4;0.27257!10616-108G4;4.44008e-05!10486-107A9;0.0304104!10062-101H8;0.0630829!10202-103F4;0.360843!10158-103A5;0.096841!10441-106E9;0.617367!10031-101E4;0.682198!10063-101H9;0.916112!10063-101H9;0.423776!11763-123H8;0.0142233!11765-123I1;0.0367018!11768-123I4;0.0224419!10807-111A6;0.0901811!10790-110H7;0.128016!10798-110I6;0.513932!10786-110H3;0.273266!10591-108D6;0.0508749!10593-108D8;0.507459!10590-108D5;0.0629581!10026-101D8;0.313652!10096-102C6;0.00927876!10168-103B6;0.52055!10154-103A1;0.354111!10209-103G2;0.849181!10061-101H7;0.0797151!10027-101D9;0.00464782!10043-101F7;0.715304!10783-110G9;0.0544839!10028-101E1;0.125832!10060-101H6;0.0248855!10203-103F5;0.0171256!10059-101H5;0.147777!10047-101G2;0.0623585!10029-101E2;0.19693!10058-101H4;0.0394217!10418-106C4;0.00865536!10492-107B6;0.00196898!10694-109G1;0.0103487!10797-110I5;0.825728!10057-101H3;0.00281997!10100-102D1;0.0778299!10055-101H1;0.00712676!10204-103F6;0.00714663!10191-103E2;0.360117!10563-108A5;0.0184663
|name=PLAG1_si
|name=PLAG1_si
|tomtom_result=Macho-1#MA0118.1;-2;0.000256114;0.12191;0.182071;9;AGAGGGGGCCCTA;TGGGGGGTC;+!MSN2#MA0341.1;-3;0.000411363;0.195809;0.182071;5;AGAGGGGGCCCTA;AGGGG;+!opa#MA0456.1;1;0.000579405;0.275797;0.182071;11;AGAGGGGGCCCTA;CAGCGGGGGGTC;-!Pax4#MA0068.1;1;0.00101564;0.483446;0.239365;13;AGAGGGGGCCCTA;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-!MSN4#MA0342.1;-3;0.00153481;0.730567;0.289376;5;AGAGGGGGCCCTA;AGGGG;+!MIG1#MA0337.1;-1;0.00264584;1.25942;0.303897;7;AGAGGGGGCCCTA;GCGGGGG;-!YML081W#MA0431.1;-1;0.00271133;1.2906;0.303897;9;AGAGGGGGCCCTA;GTGCGGGGT;-!PLAG1#MA0163.1;-4;0.00312798;1.48892;0.303897;9;AGAGGGGGCCCTA;GGGGCCCAAGGGGG;+!RGM1#MA0366.1;-3;0.00377987;1.79922;0.303897;5;AGAGGGGGCCCTA;AGGGG;+!YGR067C#MA0425.1;4;0.00393051;1.87092;0.303897;10;AGAGGGGGCCCTA;TGAAAAAGTGGGGT;-!YER130C#MA0423.1;0;0.00394259;1.87667;0.303897;9;AGAGGGGGCCCTA;AATAGGGGT;-!CTCF#MA0139.1;6;0.0040969;1.95013;0.303897;13;AGAGGGGGCCCTA;TGGCCACCAGGGGGCGCTA;+!CRZ1#MA0285.1;-4;0.00419073;1.99479;0.303897;9;AGAGGGGGCCCTA;GTGGCTTAG;-!ADR1#MA0268.1;-1;0.00452801;2.15533;0.304901;7;AGAGGGGGCCCTA;GTGGGGT;-!btd#MA0443.1;-3;0.00538822;2.56479;0.338636;10;AGAGGGGGCCCTA;AGGGGGCGGA;+!SP1#MA0079.2;2;0.00640972;3.05103;0.377658;8;AGAGGGGGCCCTA;GGGGGCGGGG;-!MIG2#MA0338.1;-2;0.0080092;3.81238;0.400737;7;AGAGGGGGCCCTA;TGCGGGG;-!SP1#MA0079.2;0;0.0080402;3.82713;0.400737;10;AGAGGGGGCCCTA;GGGGCGGGGT;+!GIS1#MA0306.1;0;0.00847374;4.0335;0.400737;9;AGAGGGGGCCCTA;TTTAGGGGT;-!abi4#MA0123.1;-3;0.00850178;4.04685;0.400737;10;AGAGGGGGCCCTA;GGGGGCACCG;-!AFT1#MA0269.1;3;0.0112566;5.35815;0.505322;13;AGAGGGGGCCCTA;CCAATCGGGTGCAATATGTAA;-!MZF1_1-4#MA0056.1;-2;0.0127273;6.05818;0.545371;6;AGAGGGGGCCCTA;TGGGGA;+!STP2#MA0395.1;1;0.014006;6.66687;0.570393;13;AGAGGGGGCCCTA;TGATCGGCGCCGCACGACGA;+!Klf4#MA0039.1;2;0.0153725;7.31733;0.570393;8;AGAGGGGGCCCTA;TAAAGGAAGG;+!YPR022C#MA0436.1;-1;0.0154259;7.34273;0.570393;7;AGAGGGGGCCCTA;CGTGGGG;-!MZF1_5-13#MA0057.1;-1;0.0161912;7.70703;0.570393;10;AGAGGGGGCCCTA;GGAGGGGGAA;+!MIG3#MA0339.1;-2;0.0163365;7.77616;0.570393;7;AGAGGGGGCCCTA;TGCGGGG;-
}}
}}

Latest revision as of 13:26, 7 September 2012

Full Name: PLAG1_si

Motif matrix
POACGT
117.01.05.02.0
27.0000000000000015.012.01.0
39.01.08.07.000000000000001
46.00.016.03.0
52.02.020.01.0
64.00.021.00.0
70.00.025.00.0
80.00.025.00.0
91.014.00000000000000210.00.0
106.09.01.09.0
111.010.07.0000000000000017.000000000000001
123.06.05.011.0
1312.06.04.03.0

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Macho-1#MA0118.1-20.0002561140.121910.1820719AGAGGGGGCCCTATGGGGGGTC+
MSN2#MA0341.1-30.0004113630.1958090.1820715AGAGGGGGCCCTAAGGGG+
opa#MA0456.110.0005794050.2757970.18207111AGAGGGGGCCCTACAGCGGGGGGTC-
Pax4#MA0068.110.001015640.4834460.23936513AGAGGGGGCCCTAGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
MSN4#MA0342.1-30.001534810.7305670.2893765AGAGGGGGCCCTAAGGGG+
MIG1#MA0337.1-10.002645841.259420.3038977AGAGGGGGCCCTAGCGGGGG-
YML081W#MA0431.1-10.002711331.29060.3038979AGAGGGGGCCCTAGTGCGGGGT-
PLAG1#MA0163.1-40.003127981.488920.3038979AGAGGGGGCCCTAGGGGCCCAAGGGGG+
RGM1#MA0366.1-30.003779871.799220.3038975AGAGGGGGCCCTAAGGGG+
YGR067C#MA0425.140.003930511.870920.30389710AGAGGGGGCCCTATGAAAAAGTGGGGT-
YER130C#MA0423.100.003942591.876670.3038979AGAGGGGGCCCTAAATAGGGGT-
CTCF#MA0139.160.00409691.950130.30389713AGAGGGGGCCCTATGGCCACCAGGGGGCGCTA+
CRZ1#MA0285.1-40.004190731.994790.3038979AGAGGGGGCCCTAGTGGCTTAG-
ADR1#MA0268.1-10.004528012.155330.3049017AGAGGGGGCCCTAGTGGGGT-
btd#MA0443.1-30.005388222.564790.33863610AGAGGGGGCCCTAAGGGGGCGGA+
SP1#MA0079.220.006409723.051030.3776588AGAGGGGGCCCTAGGGGGCGGGG-
MIG2#MA0338.1-20.00800923.812380.4007377AGAGGGGGCCCTATGCGGGG-
SP1#MA0079.200.00804023.827130.40073710AGAGGGGGCCCTAGGGGCGGGGT+
GIS1#MA0306.100.008473744.03350.4007379AGAGGGGGCCCTATTTAGGGGT-
abi4#MA0123.1-30.008501784.046850.40073710AGAGGGGGCCCTAGGGGGCACCG-
AFT1#MA0269.130.01125665.358150.50532213AGAGGGGGCCCTACCAATCGGGTGCAATATGTAA-
MZF1_1-4#MA0056.1-20.01272736.058180.5453716AGAGGGGGCCCTATGGGGA+
STP2#MA0395.110.0140066.666870.57039313AGAGGGGGCCCTATGATCGGCGCCGCACGACGA+
Klf4#MA0039.120.01537257.317330.5703938AGAGGGGGCCCTATAAAGGAAGG+
YPR022C#MA0436.1-10.01542597.342730.5703937AGAGGGGGCCCTACGTGGGG-
MZF1_5-13#MA0057.1-10.01619127.707030.57039310AGAGGGGGCCCTAGGAGGGGGAA+
MIG3#MA0339.1-20.01633657.776160.5703937AGAGGGGGCCCTATGCGGGG-
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:PLAG1_si&oldid=2134001"