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MacroAPE 1083:CARGWTGY,motif333: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;0.664;626.152;0.664;36.52!2;530.536;0.664;0.664;132.136!3;245.68;84.328;222.44;112.216!4;29.216;0.664;633.456;0.664!5;320.048;0.664;0.664;34...")
 
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9A1;0.505594!12180-129A2;2.4149e-06!12181-129A3;1.56346e-07!12176-128I7;1.41362e-07!12177-128I8;1.56778e-07!12182-129A4;1.35229e-07!12183-129A5;1.71093e-06!12184-129A6;4.39455e-06!10809-111A8;1.5091e-06!10597-108E3;0.267084!10717-109I6;0.0277361!10455-106G5;0.327964!10534-107G3;0.0439694!10429-106D6;0.0754396!10464-106H5;0.0351084!10827-111C8;0.0671785!10789-110H6;0.00154711!10828-111C9;0.000830398!10788-110H5;6.04748e-06!10792-110H9;0.00801199!10765-110E9;0.000704107!10829-111D1;0.00351786!10830-111D2;0.00718061!10831-111D3;0.00257453!10832-111D4;0.000469484!10833-111D5;0.0135139!10764-110E8;0.000953465!10770-110F5;0.00270007!10399-106A3;0.00260356!10400-106A4;0.00501028!10405-106A9;0.00360092!10834-111D6;0.00465566!10835-111D7;0.00141411!10836-111D8;0.531306!10837-111D9;0.25422!10699-109G6;0.0253435!10802-111A1;0.00148045!10796-110I4;0.132129!10010-101C1;0.144852!10810-111A9;0.927558!10421-106C7;0.172812!10708-109H6;0.0457632!12235-129G3;0.0495825!12236-129G4;0.208934!12237-129G5;0.378126!10167-103B5;0.51726!10151-102I7;0.234323!10428-106D5;0.214916!10795-110I3;0.436212!10805-111A4;0.262548!10052-101G7;0.117886!10189-103D9;0.655738!10589-108D4;0.298066!10425-106D2;0.459437!10427-106D4;0.0241115!10702-109G9;0.0726881!10432-106D9;0.213238!10496-107C1;0.822183!10718-109I7;0.880822!10011-101C2;0.00104809!10053-101G8;0.653973!10686-109F2;4.08409e-06!10084-102B3;0.913683!10012-101C3;0.232338!10085-102B4;0.261024!10482-107A5;0.109726!10419-106C5;0.375272!10080-102A8;0.796063!10760-110E4;0.650341!10709-109H7;0.556272!10710-109H8;0.800484!10703-109H1;0.418316!10719-109I8;0.0570396!10642-109A3;0.320529!10177-103C6;0.00344659!10164-103B2;0.136362!10173-103C2;0.186294!10166-103B4;0.108554!10083-102B2;0.102407!10188-103D8;0.118419!10552-107I3;0.114509!10553-107I4;0.422081!10013-101C4;0.0921137!10536-107G5;0.574138!10618-108G6;0.0366856!10423-106C9;0.685087!10785-110H2;0.116045!12238-129G6;0.171652!12239-129G7;0.327997!12240-129G8;0.00923877!10416-106C2;0.90891!10801-110I9;0.00186704!10766-110F1;0.000178498!10824-111C5;0.00637688!10825-111C6;0.819966!10826-111C7;0.793848!10454-106G4;0.871522!10409-106B4;0.91919!10638-108I8;0.00427514!10636-108I6;0.716366!10513-107D9;0.256574!10420-106C6;0.00974773!10082-102B1;0.193634!10014-101C5;0.843103!10070-101I7;0.518163!10452-106G2;0.747329!10453-106G3;0.855371!10449-106F8;0.934692!10042-101F6;0.95869!10069-101I6;0.342649!10193-103E4;0.407642!10631-108I1;0.204219!10438-106E6;0.0393935!10488-107B2;0.409071!10196-103E7;0.343452!10071-101I8;0.269742!10071-101I8;0.761212!10041-101F5;0.250615!10451-106G1;0.433947!10450-106F9;0.0698967!10604-108F1;0.0796673!10605-108F2;0.333065!10606-108F3;0.652682!10603-108E9;0.544052!10497-107C2;0.413543!10448-106F7;0.181647!10643-109A4;0.431744!10426-106D3;0.00895666!10431-106D8;0.469341!10197-103E8;0.579378!10443-106F2;0.350324!10815-111B5;0.603477!10816-111B6;0.673678!10817-111B7;0.628546!10015-101C6;0.672464!10410-106B5;0.324992!10054-101G9;0.325481!10758-110E2;0.112822!10711-109H9;0.294032!10040-101F4;0.384086!10470-106I2;0.246992!10415-106C1;0.0438337!10198-103E9;0.912154!10614-108G2;0.882287!10612-108F9;0.000303396!10549-107H9;0.353145!10615-108G3;0.0284527!10487-107B1;0.102782!10433-106E1;0.386049!10688-109F4;0.465582!10444-106F3;0.609191!10444-106F3;0.361171!10485-107A8;0.441654!10413-106B8;0.686889!10175-103C4;0.483518!10161-103A8;0.146254!12131-128D7;0.318615!10624-108H3;0.00308923!10712-109I1;0.00311123!10205-103F7;0.0560478!10206-103F8;0.186821!10207-103F9;0.137711!10050-101G5;0.225814!10051-101G6;0.00386441!10016-101C7;0.143948!10046-101G1;0.128878!10778-110G4;0.203816!10633-108I3;0.0765048!10818-111B8;0.0210835!10819-111B9;0.336783!10820-111C1;0.30421!10484-107A7;0.333002!10808-111A7;0.00236967!10169-103B7;0.248767!10153-102I9;0.213452!13425-144D5;0.206499!13433-144E4;0.00561931!13437-144E8;0.0200933!11904-125F5;0.029537!11905-125F6;0.218697!10039-101F3;0.882185!10791-110H8;0.248452!10017-101C8;0.530194!10045-101F9;0.324552!10509-107D5;0.267625!10839-111E2;0.0428245!10692-109F8;0.36063!10079-102A7;0.166289!10078-102A6;0.227659!10721-110A1;0.0590124!10569-108B2;0.0341097!10570-108B3;0.683532!10571-108B4;0.73856!10647-109A8;0.683651!10752-110D5;0.214541!10782-110G8;0.0111777!10726-110A6;0.93948!10018-101C9;0.0549749!10086-102B5;0.546661!10182-103D2;0.670441!10165-103B3;0.110103!10499-107C4;0.19439!10408-106B3;0.329447!10019-101D1;0.887756!10068-101I5;0.59441!10075-102A3;0.917635!10077-102A5;0.175365!10727-110A7;0.000123366!10775-110G1;0.309501!10412-106B7;0.0135621!12231-129F8;0.640182!12232-129F9;0.0921217!12233-129G1;0.184269!12234-129G2;0.102009!10414-106B9;0.0562287!10170-103B8;0.153127!10183-103D3;0.150119!10150-102I6;0.201069!10174-103C3;0.273509!10155-103A2;0.102911!10038-101F2;0.169491!10838-111E1;0.240911!10759-110E3;0.0173764!10514-107E1;0.448951!10465-106H6;0.160119!10691-109F7;0.289743!10843-111E6;0.945228!10844-111E7;0.180768!11747-123G1;0.0140346!11748-123G2;0.478429!11749-123G3;0.129024!11750-123G4;0.542823!11751-123G5;0.120786!11840-124H4;0.188607!11752-123G6;0.0681203!11753-123G7;0.153198!11754-123G8;0.303782!11755-123G9;0.268474!11756-123H1;0.126216!11833-124G6;0.26437!11760-123H5;0.846766!11836-124G9;0.276745!11758-123H3;0.516786!11835-124G8;0.168442!11762-123H7;0.117412!11838-124H2;0.113204!11757-123H2;0.189924!11759-123H4;0.121555!11761-123H6;0.317935!11842-124H6;0.0968357!11837-124H1;0.205654!10568-108B1;0.53542!13230-141I8;0.138584!13231-141I9;0.424209!10696-109G3;0.495972!10493-107B7;0.0938938!10494-107B8;0.0809341!10850-111F4;0.0867487!10851-111F5;0.361585!10852-111F6;0.436849!10853-111F7;0.592198!10854-111F8;0.834966!10855-111F9;0.966885!10856-111G1;0.0479509!10847-111F1;0.92731!10846-111E9;0.676947!10848-111F2;0.875412!10845-111E8;0.728087!10857-111G2;0.734606!10858-111G3;0.0113186!10156-103A3;0.825132!11901-125F2;0.278222!11902-125F3;0.282302!11903-125F4;0.176127!10689-109F5;0.419557!10648-109A9;0.113015!10784-110H1;0.423903!10744-110C6;0.604121!10772-110F7;0.0327665!10474-106I6;0.00197714!10600-108E6;0.197157!10684-109E9;0.054533!12226-129F3;0.427699!12227-129F4;0.068361!10508-107D4;0.384082!10539-107G8;0.0604363!10607-108F4;0.159895!10555-107I6;0.12381!10774-110F9;0.0688462!10637-108I7;0.380015!10663-109C6;0.236616!10728-110A8;0.0534283!10729-110A9;0.0860297!10430-106D7;0.179618!10730-110B1;0.0883527!10813-111B3;0.106577!10812-111B2;0.0423364!10037-101F1;0.155276!10172-103C1;0.225456!10163-103B1;0.151139!10076-102A4;0.293687!10073-102A1;0.210461!10036-101E9;0.122604!10195-103E6;0.21811!10277-104E7;0.241615!10434-106E2;0.316321!10550-107I1;0.552865!10545-107H5;0.283121!10544-107H4;0.990581!10704-109H2;0.51399!10510-107D6;0.939593!10558-107I9;0.194236!10020-101D2;0.0132199!10732-110B3;0.562315!10049-101G4;0.73814!10698-109G5;0.68973!10437-106E5;0.156653!10417-106C3;0.486064!10035-101E8;0.231659!10171-103B9;0.209973!10157-103A4;0.127493!10034-101E7;0.29475!10072-101I9;0.235607!10199-103F1;0.110428!10200-103F2;0.444881!10697-109G4;0.290972!10723-110A3;0.316959!10179-103C8;0.790468!10160-103A7;0.026365!10180-103C9;0.0443459!10162-103A9;0.406118!10021-101D3;0.190383!10840-111E3;0.611419!10706-109H4;0.0604283!10033-101E6;0.539239!10032-101E5;0.191329!10490-107B4;0.21514!10439-106E7;0.57297!10022-101D4;0.655936!10176-103C5;0.570968!10469-106I1;0.140872!10067-101I4;0.00741653!10411-106B6;0.40325!10471-106I3;0.112341!10030-101E3;0.318642!10475-106I7;0.262245!10787-110H4;0.0136781!10477-106I9;0.0523335!10695-109G2;0.0043489!11771-123I7;0.125984!11772-123I8;0.364031!11773-123I9;0.245208!10093-102C3;0.131798!10442-106F1;0.433917!10442-106F1;0.737872!10201-103F3;0.68287!10639-108I9;0.548798!11843-124H7;0.00287102!11841-124H5;0.0096645!10693-109F9;0.386507!10436-106E4;0.0401922!10483-107A6;0.289254!10282-104F3;0.800281!10023-101D5;0.0666507!10066-101I3;0.0758233!10065-101I2;0.405016!10800-110I8;0.388938!10610-108F7;0.00207513!10841-111E4;0.0409219!10541-107H1;0.24485!10842-111E5;0.168514!10562-108A4;0.0405653!10024-101D6;0.421506!10064-101I1;0.789796!10609-108F6;0.593871!10048-101G3;0.508839!10781-110G7;0.53807!10181-103D1;0.397738!10159-103A6;0.24015!10056-101H2;0.429755!10737-110B8;0.213319!10025-101D7;0.190961!10044-101F8;0.00439589!10424-106D1;0.0926594!10463-106H4;0.169838!10616-108G4;0.908802!10486-107A9;0.820607!10062-101H8;0.19525!10202-103F4;0.62362!10158-103A5;0.188672!10441-106E9;0.529651!10031-101E4;0.000537406!10063-101H9;0.256494!10063-101H9;0.109033!11763-123H8;0.733257!11765-123I1;0.201383!11768-123I4;0.223039!10807-111A6;0.249461!10790-110H7;0.0106491!10798-110I6;0.00495203!10786-110H3;0.014692!10591-108D6;0.00572282!10593-108D8;0.006248!10590-108D5;6.90845e-05!10026-101D8;0.0470011!10096-102C6;0.00090815!10168-103B6;4.26412e-07!10154-103A1;0.181096!10209-103G2;0.315414!10061-101H7;0.612048!10027-101D9;0.736251!10043-101F7;2.80167e-05!10783-110G9;0.00713428!10028-101E1;0.608562!10060-101H6;0.814165!10203-103F5;0.971155!10059-101H5;0.209615!10047-101G2;0.111538!10029-101E2;0.102301!10058-101H4;0.942742!10418-106C4;0.513163!10492-107B6;0.386872!10694-109G1;0.752467!10797-110I5;0.0219987!10057-101H3;0.972611!10100-102D1;0.399749!10055-101H1;0.512749!10204-103F6;0.071632!10191-103E2;0.316989!10563-108A5;0.0947069
|name=CARGWTGY,motif333,CNhs13223,T:664.0(25.10%),B:11666.0(15.61%),P:1e-35
|name=CARGWTGY,motif333,CNhs13223,T:664.0(25.10%),B:11666.0(15.61%),P:1e-35
|tomtom_result=ESR2#MA0258.1;6;0.0109691;5.22129;1;8;CAAGTTGT;CAAGGTCACGGTGACCTG;+!BAS1#MA0278.1;13;0.0147952;7.04252;1;8;CAAGTTGT;GCACAGCCAGAGTCAAGTCAA;+!Ar#MA0007.1;8;0.016977;8.08106;1;8;CAAGTTGT;GGCGGGTACACGATGTTCTTAT;-!ceh-22#MA0264.1;3;0.020303;9.66421;1;8;CAAGTTGT;TTTCAAGTGGT;-!NR3C1#MA0113.1;6;0.0207382;9.87139;1;8;CAAGTTGT;TCAGGACATAATGTTCCC;-
}}
}}

Latest revision as of 13:37, 7 September 2012

Full Name: CARGWTGY,motif333,CNhs13223,T:664.0(25.10%),B:11666.0(15.61%),P:1e-35

Motif matrix
POACGT
10.664626.1520.66436.52
2530.5360.6640.664132.136
3245.6884.328222.44112.216
429.2160.664633.4560.664
5320.0480.6640.664342.624
6234.39243.160.664385.784
70.664124.832416.328122.176
8101.592169.984138.112254.312

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
ESR2#MA0258.160.01096915.2212918CAAGTTGTCAAGGTCACGGTGACCTG+
BAS1#MA0278.1130.01479527.0425218CAAGTTGTGCACAGCCAGAGTCAAGTCAA+
Ar#MA0007.180.0169778.0810618CAAGTTGTGGCGGGTACACGATGTTCTTAT-
ceh-22#MA0264.130.0203039.6642118CAAGTTGTTTTCAAGTGGT-
NR3C1#MA0113.160.02073829.8713918CAAGTTGTTCAGGACATAATGTTCCC-
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