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MacroAPE 1083:3-GATGATGAT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;157.878;63.903;1024.954;6.265!2;914.69;258.118;78.939;1.253!3;456.092;1.253;1.253;794.402!4;15.036;1.253;1235.458;1.253!5;888.377;13.783;150...")
 
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110H6;0.71405!10828-111C9;0.995996!10788-110H5;0.927509!10792-110H9;0.650845!10765-110E9;0.834842!10829-111D1;0.75261!10830-111D2;0.594962!10831-111D3;0.709505!10832-111D4;0.97743!10833-111D5;0.568715!10764-110E8;0.643269!10770-110F5;0.668633!10399-106A3;0.754911!10400-106A4;0.884788!10405-106A9;0.798453!10834-111D6;0.84055!10835-111D7;0.934501!10836-111D8;0.154439!10837-111D9;0.276741!10699-109G6;0.660683!10802-111A1;0.796562!10796-110I4;0.419917!10010-101C1;0.151346!10810-111A9;0.07193!10421-106C7;0.787343!10708-109H6;0.365104!12235-129G3;0.487679!12236-129G4;0.393085!12237-129G5;0.260392!10167-103B5;0.434456!10151-102I7;0.196274!10428-106D5;0.305324!10795-110I3;0.78959!10805-111A4;0.133652!10052-101G7;0.384709!10189-103D9;0.0134222!10589-108D4;0.0572548!10425-106D2;0.649995!10427-106D4;0.370314!10702-109G9;0.373127!10432-106D9;0.204004!10496-107C1;0.628257!10718-109I7;0.368178!10011-101C2;0.895395!10053-101G8;0.0660945!10686-109F2;0.973679!10084-102B3;0.847475!10012-101C3;0.307771!10085-102B4;0.150717!10482-107A5;0.362982!10419-106C5;0.557707!10080-102A8;0.689897!10760-110E4;0.000276092!10709-109H7;0.272535!10710-109H8;0.798115!10703-109H1;0.720746!10719-109I8;0.31036!10642-109A3;0.621169!10177-103C6;0.333734!10164-103B2;0.308521!10173-103C2;0.364741!10166-103B4;0.141879!10083-102B2;0.273088!10188-103D8;0.310078!10552-107I3;0.253393!10553-107I4;0.571852!10013-101C4;0.33442!10536-107G5;0.0413262!10618-108G6;0.337428!10423-106C9;0.3159!10785-110H2;0.67758!12238-129G6;0.958725!12239-129G7;0.0709696!12240-129G8;0.537409!10416-106C2;0.145039!10801-110I9;0.0959543!10766-110F1;0.709339!10824-111C5;0.744011!10825-111C6;0.221948!10826-111C7;0.210469!10454-106G4;0.213933!10409-106B4;0.108772!10638-108I8;0.611829!10636-108I6;0.970398!10513-107D9;0.622567!10420-106C6;0.607195!10082-102B1;0.207503!10014-101C5;0.000129783!10070-101I7;0.00846686!10452-106G2;0.00222309!10453-106G3;0.161973!10449-106F8;0.0376415!10042-101F6;0.098807!10069-101I6;0.9501!10193-103E4;0.283422!10631-108I1;0.318019!10438-106E6;0.331939!10488-107B2;0.217005!10196-103E7;0.705576!10071-101I8;0.0185285!10071-101I8;0.000351501!10041-101F5;0.282496!10451-106G1;0.251846!10450-106F9;0.195127!10604-108F1;0.651916!10605-108F2;0.114148!10606-108F3;0.336137!10603-108E9;0.185906!10497-107C2;0.16373!10448-106F7;0.201752!10643-109A4;0.948917!10426-106D3;0.38395!10431-106D8;0.194735!10197-103E8;0.284502!10443-106F2;0.0299627!10815-111B5;0.568506!10816-111B6;0.474071!10817-111B7;0.47322!10015-101C6;0.496568!10410-106B5;0.00647828!10054-101G9;0.133987!10758-110E2;0.943311!10711-109H9;0.596191!10040-101F4;0.926638!10470-106I2;0.0907148!10415-106C1;0.910533!10198-103E9;0.758581!10614-108G2;0.00193489!10612-108F9;0.441279!10549-107H9;0.208052!10615-108G3;0.566721!10487-107B1;0.458641!10433-106E1;0.798992!10688-109F4;0.834939!10444-106F3;0.756112!10444-106F3;0.417449!10485-107A8;0.524815!10413-106B8;0.440535!10175-103C4;0.693018!10161-103A8;0.469933!12131-128D7;0.764656!10624-108H3;0.61815!10712-109I1;0.693046!10205-103F7;0.19367!10206-103F8;0.128965!10207-103F9;0.155844!10050-101G5;0.00835913!10051-101G6;0.0851819!10016-101C7;0.232833!10046-101G1;0.118416!10778-110G4;0.261197!10633-108I3;0.804793!10818-111B8;0.410075!10819-111B9;0.680868!10820-111C1;0.76871!10484-107A7;0.685936!10808-111A7;0.665237!10169-103B7;0.325067!10153-102I9;0.155773!13425-144D5;0.523714!13433-144E4;0.725946!13437-144E8;0.775886!11904-125F5;0.62595!11905-125F6;0.686392!10039-101F3;0.410367!10791-110H8;0.120255!10017-101C8;0.464178!10045-101F9;0.0238955!10509-107D5;0.00670837!10839-111E2;0.406608!10692-109F8;0.236826!10079-102A7;0.120354!10078-102A6;0.0992675!10721-110A1;0.242981!10569-108B2;0.208117!10570-108B3;0.463659!10571-108B4;0.259265!10647-109A8;0.415798!10752-110D5;0.423272!10782-110G8;0.538879!10726-110A6;0.521166!10018-101C9;0.0879553!10086-102B5;0.111603!10182-103D2;0.0292872!10165-103B3;0.679515!10499-107C4;0.557135!10408-106B3;0.843219!10019-101D1;0.220573!10068-101I5;0.0448608!10075-102A3;0.096972!10077-102A5;0.0516281!10727-110A7;0.469171!10775-110G1;0.594866!10412-106B7;0.364862!12231-129F8;0.487102!12232-129F9;0.0170106!12233-129G1;0.00788295!12234-129G2;0.0943874!10414-106B9;0.346799!10170-103B8;0.565002!10183-103D3;0.0761057!10150-102I6;0.0602611!10174-103C3;0.235414!10155-103A2;0.874594!10038-101F2;0.882027!10838-111E1;0.882508!10759-110E3;0.368262!10514-107E1;0.219451!10465-106H6;0.787871!10691-109F7;0.780225!10843-111E6;0.56642!10844-111E7;0.327713!11747-123G1;0.419105!11748-123G2;0.714435!11749-123G3;0.686509!11750-123G4;0.793032!11751-123G5;0.984627!11840-124H4;0.680445!11752-123G6;0.992447!11753-123G7;0.399635!11754-123G8;0.997941!11755-123G9;0.772035!11756-123H1;0.629472!11833-124G6;0.93942!11760-123H5;0.900804!11836-124G9;0.592794!11758-123H3;0.558823!11835-124G8;0.598764!11762-123H7;0.668059!11838-124H2;0.46742!11757-123H2;0.828406!11759-123H4;0.859783!11761-123H6;0.797722!11842-124H6;0.606009!11837-124H1;0.694795!10568-108B1;0.368801!13230-141I8;0.4342!13231-141I9;0.984242!10696-109G3;0.936491!10493-107B7;0.969825!10494-107B8;0.838175!10850-111F4;0.751735!10851-111F5;0.951472!10852-111F6;0.363088!10853-111F7;0.71608!10854-111F8;0.421629!10855-111F9;0.573133!10856-111G1;0.565888!10847-111F1;0.184006!10846-111E9;0.779039!10848-111F2;0.905407!10845-111E8;0.914134!10857-111G2;0.720872!10858-111G3;0.718754!10156-103A3;0.762891!11901-125F2;0.246913!11902-125F3;0.0245805!11903-125F4;0.063478!10689-109F5;0.171263!10648-109A9;0.632627!10784-110H1;0.927273!10744-110C6;0.298542!10772-110F7;0.309405!10474-106I6;0.980116!10600-108E6;0.205535!10684-109E9;0.528874!12226-129F3;0.557346!12227-129F4;0.800745!10508-107D4;0.904746!10539-107G8;0.100459!10607-108F4;0.669227!10555-107I6;0.748934!10774-110F9;0.172154!10637-108I7;0.821313!10663-109C6;0.892839!10728-110A8;0.788398!10729-110A9;0.453764!10430-106D7;0.964502!10730-110B1;0.0761763!10813-111B3;0.0989919!10812-111B2;0.757878!10037-101F1;0.741824!10172-103C1;0.193983!10163-103B1;0.0964853!10076-102A4;0.353437!10073-102A1;0.0988607!10036-101E9;0.28361!10195-103E6;0.170045!10277-104E7;0.16984!10434-106E2;0.651413!10550-107I1;0.522774!10545-107H5;0.736724!10544-107H4;0.423503!10704-109H2;0.271097!10510-107D6;0.912302!10558-107I9;0.941998!10020-101D2;0.874624!10732-110B3;0.098044!10049-101G4;0.701909!10698-109G5;0.664548!10437-106E5;0.728067!10417-106C3;0.474691!10035-101E8;0.0752138!10171-103B9;0.125314!10157-103A4;0.0695178!10034-101E7;0.197733!10072-101I9;0.140249!10199-103F1;0.307013!10200-103F2;0.0858334!10697-109G4;0.0982917!10723-110A3;0.824546!10179-103C8;0.0162041!10160-103A7;0.124021!10180-103C9;0.128774!10162-103A9;0.0581236!10021-101D3;0.244644!10840-111E3;0.0497362!10706-109H4;0.412059!10033-101E6;0.0449758!10032-101E5;0.254013!10490-107B4;0.115745!10439-106E7;0.656464!10022-101D4;0.274313!10176-103C5;0.0129502!10469-106I1;0.230612!10067-101I4;0.166494!10411-106B6;0.0501435!10471-106I3;0.297221!10030-101E3;0.688522!10475-106I7;0.534745!10787-110H4;0.165251!10477-106I9;0.325576!10695-109G2;0.896857!11771-123I7;0.674986!11772-123I8;0.346787!11773-123I9;0.110653!10093-102C3;0.0716085!10442-106F1;0.0235212!10442-106F1;0.650401!10201-103F3;0.821603!10639-108I9;0.0270603!11843-124H7;0.617875!11841-124H5;0.389009!10693-109F9;0.523083!10436-106E4;0.572882!10483-107A6;0.665409!10282-104F3;0.210095!10023-101D5;0.682329!10066-101I3;0.424901!10065-101I2;0.241672!10800-110I8;0.110443!10610-108F7;0.560759!10841-111E4;0.836485!10541-107H1;0.65447!10842-111E5;0.40734!10562-108A4;0.227519!10024-101D6;0.411157!10064-101I1;0.00929388!10609-108F6;0.00500731!10048-101G3;0.319922!10781-110G7;0.0741411!10181-103D1;0.251494!10159-103A6;0.987434!10056-101H2;0.882571!10737-110B8;0.971156!10025-101D7;0.971831!10044-101F8;0.297459!10424-106D1;0.0484001!10463-106H4;0.172846!10616-108G4;0.989839!10486-107A9;0.244948!10062-101H8;0.946266!10202-103F4;0.00745563!10158-103A5;0.0779824!10441-106E9;0.984287!10031-101E4;0.533372!10063-101H9;0.217271!10063-101H9;0.24057!11763-123H8;0.134603!11765-123I1;0.646565!11768-123I4;0.590505!10807-111A6;0.871231!10790-110H7;0.870815!10798-110I6;0.97702!10786-110H3;0.522446!10591-108D6;0.990705!10593-108D8;0.589593!10590-108D5;0.597609!10026-101D8;0.771676!10096-102C6;0.166731!10168-103B6;0.445897!10154-103A1;0.375337!10209-103G2;0.642267!10061-101H7;0.206398!10027-101D9;0.0699078!10043-101F7;0.919932!10783-110G9;0.526494!10028-101E1;0.970807!10060-101H6;0.0575248!10203-103F5;0.0197323!10059-101H5;0.150827!10047-101G2;0.198187!10029-101E2;0.187849!10058-101H4;0.00899992!10418-106C4;0.136169!10492-107B6;0.119343!10694-109G1;0.758843!10797-110I5;0.486327!10057-101H3;0.339437!10100-102D1;0.168807!10055-101H1;0.0910366!10204-103F6;0.0408771!10191-103E2;0.0072556!10563-108A5;0.214008
|name=3-GATGATGAT,CNhs13639,BestGuess:NFE2L1.p2.SwissRegulon.nucfreq(0.64525684730301),T:1253.0(36.79%),B:12578.6(27.32%),P:1e-32
|name=3-GATGATGAT,CNhs13639,BestGuess:NFE2L1.p2.SwissRegulon.nucfreq(0.64525684730301),T:1253.0(36.79%),B:12578.6(27.32%),P:1e-32
|tomtom_result=DOT6#MA0351.1;7;0.0159036;7.5701;1;9;GATGATGAT;AGGATGCGATGAGGTGCAGAA;-!Mafb#MA0117.1;0;0.0170815;8.13078;1;8;GATGATGAT;GCTGACGG;+!TOD6#MA0350.1;7;0.0187252;8.91318;1;9;GATGATGAT;AAAACGCGATGAGCTGTGCCT;-
}}
}}

Latest revision as of 14:01, 7 September 2012

Full Name: 3-GATGATGAT,CNhs13639,BestGuess:NFE2L1.p2.SwissRegulon.nucfreq(0.64525684730301),T:1253.0(36.79%),B:12578.6(27.32%),P:1e-32

Motif matrix
POACGT
1157.87863.9031024.9546.265
2914.69258.11878.9391.253
3456.0921.2531.253794.402
415.0361.2531235.4581.253
5888.37713.783150.36200.48
6323.274115.276169.155645.295
787.7181.4451082.5921.253
8705.43985.204107.758354.599
9205.492298.214179.179568.862

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

DOT6#MA0351.170.01590367.570119GATGATGATAGGATGCGATGAGGTGCAGAA-
Mafb#MA0117.100.01708158.1307818GATGATGATGCTGACGG+
TOD6#MA0350.170.01872528.9131819GATGATGATAAAACGCGATGAGCTGTGCCT-