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MacroAPE 1083:P73 si: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;1.7948717948718;1.7948717948718;7.692307692307695;3.7179487179487203!2;2.3076923076923097;1.1538461538461535;9.743589743589736;1.79487179487...")
 
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06D6;0.0874691!10464-106H5;0.0507063!10827-111C8;0.175693!10789-110H6;0.0462827!10828-111C9;0.134422!10788-110H5;0.0235004!10792-110H9;0.424043!10765-110E9;0.112854!10829-111D1;0.131275!10830-111D2;0.665588!10831-111D3;0.0183357!10832-111D4;0.122472!10833-111D5;0.34709!10764-110E8;0.175448!10770-110F5;0.208813!10399-106A3;0.502218!10400-106A4;0.364132!10405-106A9;0.280216!10834-111D6;0.358526!10835-111D7;0.170123!10836-111D8;0.0635709!10837-111D9;0.234826!10699-109G6;0.126576!10802-111A1;0.0525898!10796-110I4;0.0532211!10010-101C1;0.955851!10810-111A9;0.193961!10421-106C7;0.263554!10708-109H6;0.714931!12235-129G3;0.131144!12236-129G4;0.0231921!12237-129G5;0.0410294!10167-103B5;0.0569369!10151-102I7;0.714175!10428-106D5;0.919995!10795-110I3;0.0531259!10805-111A4;0.451811!10052-101G7;0.0588936!10189-103D9;0.0342166!10589-108D4;0.185731!10425-106D2;0.275403!10427-106D4;0.00817546!10702-109G9;0.60225!10432-106D9;0.12323!10496-107C1;0.209386!10718-109I7;0.847065!10011-101C2;0.383604!10053-101G8;0.0480251!10686-109F2;0.503955!10084-102B3;0.222447!10012-101C3;0.866649!10085-102B4;0.916617!10482-107A5;0.327434!10419-106C5;0.281827!10080-102A8;0.598856!10760-110E4;0.138055!10709-109H7;0.259823!10710-109H8;0.673047!10703-109H1;0.982051!10719-109I8;0.400434!10642-109A3;0.295381!10177-103C6;0.27485!10164-103B2;0.606305!10173-103C2;0.77989!10166-103B4;0.472551!10083-102B2;0.524833!10188-103D8;0.539908!10552-107I3;0.84103!10553-107I4;0.40683!10013-101C4;0.326388!10536-107G5;0.100689!10618-108G6;0.0824896!10423-106C9;0.571117!10785-110H2;0.757262!12238-129G6;0.736742!12239-129G7;0.038061!12240-129G8;0.148494!10416-106C2;0.107746!10801-110I9;0.589018!10766-110F1;0.0360902!10824-111C5;0.152549!10825-111C6;0.126794!10826-111C7;0.106561!10454-106G4;0.0751757!10409-106B4;0.205673!10638-108I8;0.0767335!10636-108I6;0.500043!10513-107D9;0.642958!10420-106C6;0.329889!10082-102B1;0.228199!10014-101C5;0.137984!10070-101I7;0.117388!10452-106G2;0.162144!10453-106G3;0.199926!10449-106F8;0.350091!10042-101F6;0.301636!10069-101I6;0.741878!10193-103E4;0.00206364!10631-108I1;0.939782!10438-106E6;0.317189!10488-107B2;0.296607!10196-103E7;0.650607!10071-101I8;0.133698!10071-101I8;0.0392334!10041-101F5;0.253667!10451-106G1;0.225569!10450-106F9;0.319629!10604-108F1;0.306462!10605-108F2;0.274074!10606-108F3;0.616082!10603-108E9;0.351184!10497-107C2;0.211762!10448-106F7;0.913147!10643-109A4;0.224532!10426-106D3;0.169205!10431-106D8;0.823089!10197-103E8;0.126242!10443-106F2;0.0109069!10815-111B5;0.357246!10816-111B6;0.48982!10817-111B7;0.461091!10015-101C6;0.442622!10410-106B5;0.00700273!10054-101G9;0.0398218!10758-110E2;0.00605072!10711-109H9;0.133471!10040-101F4;0.0236297!10470-106I2;0.710993!10415-106C1;0.880234!10198-103E9;0.0975701!10614-108G2;0.0722479!10612-108F9;0.378457!10549-107H9;0.701642!10615-108G3;0.110855!10487-107B1;0.222924!10433-106E1;0.957983!10688-109F4;0.00667759!10444-106F3;0.632647!10444-106F3;0.108375!10485-107A8;0.0795697!10413-106B8;0.0185142!10175-103C4;0.044943!10161-103A8;0.943218!12131-128D7;0.889464!10624-108H3;0.0116146!10712-109I1;0.722458!10205-103F7;0.341913!10206-103F8;0.0422751!10207-103F9;0.0928576!10050-101G5;0.296364!10051-101G6;0.00580816!10016-101C7;0.0425836!10046-101G1;0.0273045!10778-110G4;0.163794!10633-108I3;0.130006!10818-111B8;0.469085!10819-111B9;0.573756!10820-111C1;0.478347!10484-107A7;0.49465!10808-111A7;0.517584!10169-103B7;0.360625!10153-102I9;0.803217!13425-144D5;0.938517!13433-144E4;0.416829!13437-144E8;0.629339!11904-125F5;0.705777!11905-125F6;0.844014!10039-101F3;0.623274!10791-110H8;0.716383!10017-101C8;0.28784!10045-101F9;0.073785!10509-107D5;0.220256!10839-111E2;0.358213!10692-109F8;0.678556!10079-102A7;0.177494!10078-102A6;0.0148682!10721-110A1;0.0111727!10569-108B2;0.200594!10570-108B3;0.239578!10571-108B4;0.132193!10647-109A8;0.403245!10752-110D5;0.0496409!10782-110G8;0.305733!10726-110A6;0.536691!10018-101C9;0.00136485!10086-102B5;0.0771327!10182-103D2;0.0579567!10165-103B3;0.760352!10499-107C4;0.695222!10408-106B3;0.936443!10019-101D1;0.575246!10068-101I5;0.125197!10075-102A3;0.13018!10077-102A5;0.0846391!10727-110A7;0.436478!10775-110G1;0.97067!10412-106B7;0.272826!12231-129F8;0.429742!12232-129F9;0.473081!12233-129G1;0.981252!12234-129G2;0.971752!10414-106B9;0.327754!10170-103B8;0.547565!10183-103D3;0.631556!10150-102I6;0.789339!10174-103C3;0.893814!10155-103A2;0.315337!10038-101F2;0.442291!10838-111E1;0.428898!10759-110E3;0.152082!10514-107E1;0.283028!10465-106H6;0.00691545!10691-109F7;0.135281!10843-111E6;0.490151!10844-111E7;0.147805!11747-123G1;0.115454!11748-123G2;0.421395!11749-123G3;0.434165!11750-123G4;0.126945!11751-123G5;0.29162!11840-124H4;0.0996009!11752-123G6;0.115637!11753-123G7;0.108268!11754-123G8;0.171542!11755-123G9;0.452618!11756-123H1;0.457297!11833-124G6;0.381503!11760-123H5;0.242188!11836-124G9;0.286139!11758-123H3;0.114199!11835-124G8;0.106756!11762-123H7;0.152863!11838-124H2;0.0742743!11757-123H2;0.0816887!11759-123H4;0.154569!11761-123H6;0.295177!11842-124H6;0.0470971!11837-124H1;0.057151!10568-108B1;0.154746!13230-141I8;0.945054!13231-141I9;0.232651!10696-109G3;0.251275!10493-107B7;0.783875!10494-107B8;0.0468544!10850-111F4;0.0331813!10851-111F5;0.0426445!10852-111F6;0.682251!10853-111F7;0.780727!10854-111F8;0.0169314!10855-111F9;0.260436!10856-111G1;0.101366!10847-111F1;0.948706!10846-111E9;0.247652!10848-111F2;0.682459!10845-111E8;0.110902!10857-111G2;0.58367!10858-111G3;0.960112!10156-103A3;0.0680584!11901-125F2;0.939395!11902-125F3;0.568404!11903-125F4;0.417578!10689-109F5;0.629696!10648-109A9;0.869309!10784-110H1;0.489629!10744-110C6;0.129762!10772-110F7;0.332103!10474-106I6;0.293032!10600-108E6;0.949565!10684-109E9;0.327779!12226-129F3;0.210771!12227-129F4;0.105914!10508-107D4;0.120367!10539-107G8;0.121683!10607-108F4;0.0836689!10555-107I6;0.0313999!10774-110F9;0.163768!10637-108I7;0.303654!10663-109C6;0.0390301!10728-110A8;0.142423!10729-110A9;0.0249039!10430-106D7;0.190558!10730-110B1;0.0547232!10813-111B3;0.252223!10812-111B2;0.25583!10037-101F1;0.418787!10172-103C1;0.766119!10163-103B1;0.48323!10076-102A4;0.931413!10073-102A1;0.75629!10036-101E9;0.177401!10195-103E6;0.678203!10277-104E7;0.865131!10434-106E2;0.888913!10550-107I1;0.174167!10545-107H5;0.876094!10544-107H4;0.413352!10704-109H2;0.291732!10510-107D6;0.856761!10558-107I9;0.0515523!10020-101D2;0.790502!10732-110B3;0.372213!10049-101G4;0.694991!10698-109G5;0.0070664!10437-106E5;0.513047!10417-106C3;0.978573!10035-101E8;0.193329!10171-103B9;0.743308!10157-103A4;0.656676!10034-101E7;0.864286!10072-101I9;0.776319!10199-103F1;0.227089!10200-103F2;0.000222163!10697-109G4;0.00699908!10723-110A3;0.0448586!10179-103C8;0.0786187!10160-103A7;0.958923!10180-103C9;0.640133!10162-103A9;0.525054!10021-101D3;0.648167!10840-111E3;0.0158613!10706-109H4;0.514329!10033-101E6;0.413906!10032-101E5;0.871659!10490-107B4;0.707018!10439-106E7;0.125201!10022-101D4;0.954495!10176-103C5;0.0263746!10469-106I1;0.605406!10067-101I4;0.921113!10411-106B6;0.476067!10471-106I3;0.119907!10030-101E3;0.862947!10475-106I7;0.208274!10787-110H4;0.0408098!10477-106I9;0.388366!10695-109G2;0.282274!11771-123I7;0.761618!11772-123I8;0.273524!11773-123I9;0.086338!10093-102C3;0.15197!10442-106F1;0.0014637!10442-106F1;0.0955424!10201-103F3;0.0920545!10639-108I9;0.0154957!11843-124H7;0.638602!11841-124H5;0.112367!10693-109F9;0.166562!10436-106E4;0.837831!10483-107A6;0.705658!10282-104F3;0.807965!10023-101D5;0.0585919!10066-101I3;0.0148866!10065-101I2;0.00031577!10800-110I8;0.000936917!10610-108F7;0.300419!10841-111E4;0.262334!10541-107H1;0.154522!10842-111E5;0.300749!10562-108A4;0.222606!10024-101D6;0.66638!10064-101I1;0.221755!10609-108F6;0.0754986!10048-101G3;0.635289!10781-110G7;0.110625!10181-103D1;0.90959!10159-103A6;0.301549!10056-101H2;0.761315!10737-110B8;0.133033!10025-101D7;0.67698!10044-101F8;0.412019!10424-106D1;0.358838!10463-106H4;0.560644!10616-108G4;0.930906!10486-107A9;0.0408194!10062-101H8;0.86995!10202-103F4;0.0659423!10158-103A5;0.00252673!10441-106E9;0.564946!10031-101E4;0.0907512!10063-101H9;0.763958!10063-101H9;0.272777!11763-123H8;0.0311177!11765-123I1;0.103721!11768-123I4;0.0612436!10807-111A6;0.0697292!10790-110H7;0.320052!10798-110I6;0.304574!10786-110H3;0.48472!10591-108D6;0.837707!10593-108D8;0.367965!10590-108D5;0.978557!10026-101D8;0.3141!10096-102C6;0.993588!10168-103B6;0.0785873!10154-103A1;0.78371!10209-103G2;0.916458!10061-101H7;0.00405668!10027-101D9;0.00169659!10043-101F7;0.137526!10783-110G9;0.97487!10028-101E1;0.473222!10060-101H6;0.0377544!10203-103F5;0.0561381!10059-101H5;0.00310155!10047-101G2;0.000319129!10029-101E2;0.0071436!10058-101H4;0.0143403!10418-106C4;0.000154555!10492-107B6;0.116072!10694-109G1;0.137345!10797-110I5;0.917035!10057-101H3;0.514157!10100-102D1;0.00145359!10055-101H1;0.34215!10204-103F6;0.0149477!10191-103E2;0.116193!10563-108A5;0.0972436
|name=P73_si
|name=P73_si
|tomtom_result=TP53#MA0106.1;7;3.13317e-05;0.0149139;0.0298278;12;GGGGCAGGTCTG;ACATGCCCGGGCATGTCCGG;-!PHD1#MA0355.1;1;0.00498709;2.37385;1;9;GGGGCAGGTCTG;TGCTGCAGGT;-!TEC1#MA0406.1;-1;0.00651181;3.09962;1;8;GGGGCAGGTCTG;GGGAATGT;-!SP1#MA0079.1;0;0.0116654;5.55271;1;10;GGGGCAGGTCTG;GGGGCGGGGT;+!Klf4#MA0039.1;2;0.0160457;7.63774;1;8;GGGGCAGGTCTG;TAAAGGAAGG;+!ESR1#MA0112.2;0;0.0183582;8.73848;1;12;GGGGCAGGTCTG;GGCCCAGGTCACCCTGACCT;+!sd#MA0243.1;2;0.0185709;8.83974;1;10;GGGGCAGGTCTG;CCGAGGAATGTC;-!RXR::RAR_DR5#MA0159.1;6;0.0209316;9.96346;1;11;GGGGCAGGTCTG;AGGTCATGGAGAGGTCA;+
}}
}}

Latest revision as of 14:08, 7 September 2012

Full Name: P73_si

Motif matrix
POACGT
11.79487179487181.79487179487187.6923076923076953.7179487179487203
22.30769230769230971.15384615384615359.7435897435897361.7948717948718
31.15384615384615350.010.897435897435892.948717948717955
45.7692307692307750.09.2307692307692250.0
51.153846153846153513.8461538461538450.00.0
615.00.00.00.0
74.1025641025640951.28205128205128244.8717948717948754.74358974358974
80.01.282051282051282413.7179487179487080.0
90.06.538461538461540.08.46153846153846
100.08.461538461538460.64102564102564055.897435897435895
111.15384615384615354.743589743589742.9487179487179556.153846153846151
121.923076923076923.205128205128215.5128205128205054.358974358974365

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
TP53#MA0106.173.13317e-050.01491390.029827812GGGGCAGGTCTGACATGCCCGGGCATGTCCGG-
PHD1#MA0355.110.004987092.3738519GGGGCAGGTCTGTGCTGCAGGT-
TEC1#MA0406.1-10.006511813.0996218GGGGCAGGTCTGGGGAATGT-
SP1#MA0079.100.01166545.55271110GGGGCAGGTCTGGGGGCGGGGT+
Klf4#MA0039.120.01604577.6377418GGGGCAGGTCTGTAAAGGAAGG+
ESR1#MA0112.200.01835828.73848112GGGGCAGGTCTGGGCCCAGGTCACCCTGACCT+
sd#MA0243.120.01857098.83974110GGGGCAGGTCTGCCGAGGAATGTC-
RXR::RAR_DR5#MA0159.160.02093169.96346111GGGGCAGGTCTGAGGTCATGGAGAGGTCA+
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:P73_si&oldid=2134250"