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MacroAPE 1083:TTYCGSTTC,motif442: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;25.671;19.701;19.701;531.927!2;12.537;20.895;186.861;376.707!3;25.074;253.725;84.177;234.024!4;111.639;408.945;42.984;33.432!5;145.668;58.50...")
 
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!12179-129A1;0.696782!12180-129A2;0.171521!12181-129A3;0.154906!12176-128I7;0.277492!12177-128I8;0.113206!12182-129A4;0.160684!12183-129A5;0.125868!12184-129A6;0.127934!10809-111A8;0.163622!10597-108E3;0.339756!10717-109I6;0.234358!10455-106G5;0.222398!10534-107G3;1.02501e-05!10429-106D6;1.73563e-05!10464-106H5;0.00151087!10827-111C8;0.000514494!10789-110H6;9.21553e-05!10828-111C9;0.000271594!10788-110H5;0.0851532!10792-110H9;0.000204278!10765-110E9;2.442e-05!10829-111D1;1.135e-06!10830-111D2;0.000288398!10831-111D3;0.00129289!10832-111D4;0.000928576!10833-111D5;1.65431e-05!10764-110E8;1.67435e-05!10770-110F5;0.000766119!10399-106A3;0.000931144!10400-106A4;6.80942e-05!10405-106A9;2.22001e-05!10834-111D6;0.000104793!10835-111D7;1.00416e-05!10836-111D8;0.000641988!10837-111D9;0.000265394!10699-109G6;0.00041972!10802-111A1;0.00194984!10796-110I4;0.000498238!10010-101C1;0.146586!10810-111A9;5.47791e-05!10421-106C7;0.00478766!10708-109H6;0.00100895!12235-129G3;0.0968384!12236-129G4;0.757833!12237-129G5;0.557206!10167-103B5;0.99974!10151-102I7;0.0239386!10428-106D5;0.00465432!10795-110I3;0.408755!10805-111A4;0.00129542!10052-101G7;0.152327!10189-103D9;0.000141752!10589-108D4;0.0146623!10425-106D2;0.219526!10427-106D4;0.0876223!10702-109G9;0.000859122!10432-106D9;0.0447367!10496-107C1;0.0493484!10718-109I7;0.0265271!10011-101C2;3.61869e-05!10053-101G8;6.61634e-05!10686-109F2;0.415369!10084-102B3;0.963604!10012-101C3;0.00986251!10085-102B4;0.00808082!10482-107A5;0.022937!10419-106C5;0.045781!10080-102A8;0.0358697!10760-110E4;2.51065e-05!10709-109H7;0.014331!10710-109H8;0.0494303!10703-109H1;0.136746!10719-109I8;0.556462!10642-109A3;0.734233!10177-103C6;0.36017!10164-103B2;0.0166845!10173-103C2;0.0103937!10166-103B4;0.0519802!10083-102B2;0.00814265!10188-103D8;0.0202287!10552-107I3;0.00533521!10553-107I4;0.00328638!10013-101C4;0.673308!10536-107G5;8.08645e-05!10618-108G6;0.00545338!10423-106C9;0.0336935!10785-110H2;0.0279451!12238-129G6;0.178132!12239-129G7;0.0519846!12240-129G8;0.233755!10416-106C2;0.151543!10801-110I9;0.000702591!10766-110F1;0.000737035!10824-111C5;0.00106592!10825-111C6;0.00234106!10826-111C7;0.00375488!10454-106G4;0.00137326!10409-106B4;0.00324097!10638-108I8;0.00789563!10636-108I6;0.0400219!10513-107D9;0.010315!10420-106C6;0.06683!10082-102B1;0.135794!10014-101C5;0.000460717!10070-101I7;3.6888e-05!10452-106G2;1.95806e-05!10453-106G3;0.00306899!10449-106F8;0.00150018!10042-101F6;0.000852257!10069-101I6;0.00405254!10193-103E4;9.15972e-06!10631-108I1;0.0160821!10438-106E6;0.000114781!10488-107B2;0.0812323!10196-103E7;0.0182074!10071-101I8;0.00246632!10071-101I8;2.22788e-05!10041-101F5;0.0266739!10451-106G1;0.00286144!10450-106F9;0.00655626!10604-108F1;0.0551698!10605-108F2;0.0766698!10606-108F3;0.114015!10603-108E9;0.0693593!10497-107C2;0.0446256!10448-106F7;0.00446113!10643-109A4;0.0015265!10426-106D3;0.160062!10431-106D8;0.357636!10197-103E8;0.0642675!10443-106F2;9.48336e-05!10815-111B5;0.173036!10816-111B6;0.00331703!10817-111B7;0.00855213!10015-101C6;0.00396654!10410-106B5;8.56664e-05!10054-101G9;0.408767!10758-110E2;0.000329313!10711-109H9;0.0207696!10040-101F4;0.000812304!10470-106I2;0.0139066!10415-106C1;0.0421825!10198-103E9;0.00839215!10614-108G2;0.00022616!10612-108F9;0.0535512!10549-107H9;0.0950183!10615-108G3;0.0412835!10487-107B1;0.605804!10433-106E1;0.000900566!10688-109F4;0.0582307!10444-106F3;0.347571!10444-106F3;0.0751956!10485-107A8;0.144711!10413-106B8;0.253665!10175-103C4;0.0546602!10161-103A8;0.0101841!12131-128D7;0.00390167!10624-108H3;0.0376657!10712-109I1;0.266806!10205-103F7;0.00184314!10206-103F8;2.16949e-05!10207-103F9;7.74892e-05!10050-101G5;0.000247715!10051-101G6;3.79805e-05!10016-101C7;0.000694326!10046-101G1;0.000253!10778-110G4;4.79281e-06!10633-108I3;0.20368!10818-111B8;0.327817!10819-111B9;0.049394!10820-111C1;0.0477867!10484-107A7;0.0611194!10808-111A7;0.35347!10169-103B7;2.72924e-05!10153-102I9;0.0192869!13425-144D5;0.00379322!13433-144E4;0.43233!13437-144E8;0.544579!11904-125F5;0.686233!11905-125F6;0.0159418!10039-101F3;0.513563!10791-110H8;0.0113469!10017-101C8;0.23122!10045-101F9;4.69874e-05!10509-107D5;1.70668e-07!10839-111E2;0.0714624!10692-109F8;0.15587!10079-102A7;0.506541!10078-102A6;0.000226027!10721-110A1;0.000307264!10569-108B2;0.0215574!10570-108B3;0.173588!10571-108B4;0.586041!10647-109A8;0.28286!10752-110D5;0.012008!10782-110G8;0.00568368!10726-110A6;0.619121!10018-101C9;0.491882!10086-102B5;0.198741!10182-103D2;0.000202949!10165-103B3;0.00221386!10499-107C4;0.00406214!10408-106B3;0.122556!10019-101D1;0.0276823!10068-101I5;0.000147969!10075-102A3;8.19093e-07!10077-102A5;0.00364559!10727-110A7;0.347231!10775-110G1;0.000365104!10412-106B7;0.000205457!12231-129F8;0.452809!12232-129F9;0.00112411!12233-129G1;0.00325591!12234-129G2;0.00162908!10414-106B9;0.00441128!10170-103B8;0.0761326!10183-103D3;0.0303881!10150-102I6;0.0129481!10174-103C3;0.00577476!10155-103A2;0.00557685!10038-101F2;0.00206511!10838-111E1;0.00200084!10759-110E3;0.995985!10514-107E1;0.220593!10465-106H6;0.0162871!10691-109F7;0.0479785!10843-111E6;0.475959!10844-111E7;0.340688!11747-123G1;0.382367!11748-123G2;0.839969!11749-123G3;0.11136!11750-123G4;0.158949!11751-123G5;0.0979891!11840-124H4;0.0174682!11752-123G6;0.0183231!11753-123G7;0.66763!11754-123G8;0.0758463!11755-123G9;0.486425!11756-123H1;0.63496!11833-124G6;0.735401!11760-123H5;0.784082!11836-124G9;0.439283!11758-123H3;0.372701!11835-124G8;0.425668!11762-123H7;0.0164837!11838-124H2;0.0808503!11757-123H2;0.0837764!11759-123H4;0.671364!11761-123H6;0.331668!11842-124H6;0.0582711!11837-124H1;0.100122!10568-108B1;0.010666!13230-141I8;0.885943!13231-141I9;0.0331351!10696-109G3;0.0203281!10493-107B7;0.602868!10494-107B8;0.00720456!10850-111F4;0.0261208!10851-111F5;0.000893482!10852-111F6;0.0187986!10853-111F7;0.0155748!10854-111F8;0.0133034!10855-111F9;0.0824271!10856-111G1;0.0856191!10847-111F1;0.116421!10846-111E9;0.194612!10848-111F2;0.0148308!10845-111E8;0.0379303!10857-111G2;0.0245523!10858-111G3;0.00153709!10156-103A3;0.0391792!11901-125F2;0.00457923!11902-125F3;0.00377678!11903-125F4;0.00132779!10689-109F5;0.000498642!10648-109A9;0.0139435!10784-110H1;0.049766!10744-110C6;0.0122301!10772-110F7;3.2479e-05!10474-106I6;0.00100011!10600-108E6;9.8232e-06!10684-109E9;0.0110837!12226-129F3;0.104768!12227-129F4;0.162387!10508-107D4;0.0106298!10539-107G8;0.361043!10607-108F4;0.351685!10555-107I6;0.0468278!10774-110F9;0.559745!10637-108I7;0.155539!10663-109C6;0.926573!10728-110A8;0.894052!10729-110A9;0.209112!10430-106D7;0.0625542!10730-110B1;0.00635463!10813-111B3;0.713366!10812-111B2;0.00985194!10037-101F1;0.448172!10172-103C1;0.00916157!10163-103B1;0.0345905!10076-102A4;0.00266069!10073-102A1;0.0135158!10036-101E9;0.0529791!10195-103E6;0.0139438!10277-104E7;0.00711784!10434-106E2;0.00109221!10550-107I1;0.052949!10545-107H5;0.0997284!10544-107H4;0.0264861!10704-109H2;0.111249!10510-107D6;0.83425!10558-107I9;0.50104!10020-101D2;0.922862!10732-110B3;0.000307799!10049-101G4;0.0589785!10698-109G5;0.251989!10437-106E5;0.00624054!10417-106C3;0.17858!10035-101E8;0.0943638!10171-103B9;0.0100125!10157-103A4;0.0289056!10034-101E7;0.00500343!10072-101I9;0.0100398!10199-103F1;0.0267203!10200-103F2;0.0300928!10697-109G4;9.80527e-05!10723-110A3;0.537209!10179-103C8;0.197675!10160-103A7;0.0976409!10180-103C9;0.23397!10162-103A9;0.152956!10021-101D3;0.0761555!10840-111E3;0.0041685!10706-109H4;0.00163332!10033-101E6;0.775401!10032-101E5;0.00452939!10490-107B4;0.0128853!10439-106E7;0.0822736!10022-101D4;0.101451!10176-103C5;6.58662e-05!10469-106I1;0.0210118!10067-101I4;0.268394!10411-106B6;7.19979e-06!10471-106I3;0.197183!10030-101E3;0.211721!10475-106I7;0.00163819!10787-110H4;0.456843!10477-106I9;0.0433485!10695-109G2;0.585163!11771-123I7;0.064511!11772-123I8;0.313582!11773-123I9;0.0756637!10093-102C3;0.0880968!10442-106F1;0.0131415!10442-106F1;0.0402692!10201-103F3;0.117084!10639-108I9;0.00207191!11843-124H7;0.479139!11841-124H5;0.851397!10693-109F9;0.0861823!10436-106E4;0.0514946!10483-107A6;0.00308389!10282-104F3;0.00665127!10023-101D5;0.0119251!10066-101I3;0.000484873!10065-101I2;4.95345e-05!10800-110I8;3.2206e-05!10610-108F7;0.130688!10841-111E4;0.932654!10541-107H1;0.0120211!10842-111E5;0.136028!10562-108A4;0.834013!10024-101D6;0.872503!10064-101I1;0.00038121!10609-108F6;4.82741e-05!10048-101G3;0.159551!10781-110G7;9.5555e-05!10181-103D1;0.269401!10159-103A6;0.00263084!10056-101H2;0.00160457!10737-110B8;0.000320908!10025-101D7;0.112563!10044-101F8;0.29433!10424-106D1;0.0256794!10463-106H4;1.77089e-05!10616-108G4;0.00993247!10486-107A9;0.000466665!10062-101H8;0.000483884!10202-103F4;0.000177221!10158-103A5;0.00651498!10441-106E9;0.0017079!10031-101E4;0.440755!10063-101H9;0.0100928!10063-101H9;0.0247513!11763-123H8;9.79172e-05!11765-123I1;0.00872835!11768-123I4;0.00153293!10807-111A6;0.0146475!10790-110H7;0.684392!10798-110I6;0.435859!10786-110H3;0.0936151!10591-108D6;0.954774!10593-108D8;0.380361!10590-108D5;0.969847!10026-101D8;0.222324!10096-102C6;1.96213e-05!10168-103B6;0.145926!10154-103A1;0.00836137!10209-103G2;0.00411573!10061-101H7;0.000274832!10027-101D9;5.73817e-06!10043-101F7;0.671469!10783-110G9;0.0328388!10028-101E1;0.133775!10060-101H6;0.000324555!10203-103F5;2.33685e-06!10059-101H5;9.18469e-05!10047-101G2;1.59189e-05!10029-101E2;0.0582334!10058-101H4;0.000858369!10418-106C4;1.97231e-05!10492-107B6;0.57512!10694-109G1;0.0866855!10797-110I5;0.175107!10057-101H3;0.301264!10100-102D1;0.00019488!10055-101H1;0.000125887!10204-103F6;2.93554e-06!10191-103E2;0.000685758!10563-108A5;0.00203849
|name=TTYCGSTTC,motif442,CNhs13473,T:597.0(9.87%),B:4689.2(5.89%),P:1e-32
|name=TTYCGSTTC,motif442,CNhs13473,T:597.0(9.87%),B:4689.2(5.89%),P:1e-32
|tomtom_result=ELK1#MA0028.1;1;8.15036e-05;0.0387957;0.0770958;9;TTCCGCTTC;CTTCCGGCTC;-!IRF1#MA0050.1;2;0.00137929;0.65654;0.564721;9;TTCCGCTTC;GGTTTCACTTTC;-!YBR239C#MA0420.1;1;0.00189684;0.902897;0.564721;7;TTCCGCTTC;GTTCCGGT;-!id1#MA0120.1;1;0.00302636;1.44055;0.564721;9;TTCCGCTTC;TTTTCCTTTTCG;+!STAT1#MA0137.1;3;0.00333869;1.58922;0.564721;9;TTCCGCTTC;CAGTTTCATTTTCC;-!SPIB#MA0081.1;0;0.00366855;1.74623;0.564721;7;TTCCGCTTC;TTCCTCT;-!HAL9#MA0311.1;0;0.00417906;1.98923;0.564721;5;TTCCGCTTC;TTCCG;-!LYS14#MA0325.1;2;0.00602631;2.86852;0.649062;6;TTCCGCTTC;AATTCCGG;-!IXR1#MA0323.1;6;0.00661138;3.14702;0.649062;9;TTCCGCTTC;CCCCGCTTCCGGCTT;-!IRF2#MA0051.1;7;0.00812662;3.86827;0.649062;9;TTCCGCTTC;GTTTTGCTTTCACTTTCC;-!Eip74EF#MA0026.1;1;0.00858903;4.08838;0.649062;6;TTCCGCTTC;CTTCCGG;-!GABPA#MA0062.2;3;0.00880719;4.19222;0.649062;7;TTCCGCTTC;CTCTTCCGGT;-!HMG-I/Y#MA0045.1;4;0.0109608;5.21733;0.649062;9;TTCCGCTTC;GTTTTTCCATTTGTTG;-!ASG1#MA0275.1;0;0.0115221;5.48451;0.649062;6;TTCCGCTTC;TTCCGG;-!ELK4#MA0076.1;2;0.0122848;5.84757;0.649062;7;TTCCGCTTC;ACTTCCGGT;-!SPI1#MA0080.1;1;0.013329;6.34459;0.649062;5;TTCCGCTTC;CTTCCG;-!STB3#MA0390.1;10;0.0135137;6.43253;0.649062;9;TTCCGCTTC;GTCCAAAATTTTTCACTCTGG;+!Su(H)#MA0085.1;1;0.0139876;6.65812;0.649062;9;TTCCGCTTC;ATCTCGGTTCCCACAA;-!NDT80#MA0343.1;0;0.0153198;7.29224;0.649062;9;TTCCGCTTC;TTGCGTTTTTGTGGCCGGAAA;-!SWI4#MA0401.1;0;0.0155025;7.37917;0.649062;8;TTCCGCTTC;TTTCGCGT;-!MZF1_5-13#MA0057.1;0;0.0156565;7.45248;0.649062;9;TTCCGCTTC;TTCCCCCTAC;-!Pax5#MA0014.1;3;0.0160612;7.64514;0.649062;9;TTCCGCTTC;CCGCTACGCTTCAGTGCTCT;-!Tal1::Gata1#MA0140.1;6;0.0162209;7.72116;0.649062;9;TTCCGCTTC;CTTATCTGTCCCCACCAG;-!run::Bgb#MA0242.1;0;0.0164681;7.83882;0.649062;9;TTCCGCTTC;TTGCGGTTA;-!RDR1#MA0360.1;1;0.0176079;8.38138;0.666227;7;TTCCGCTTC;GTTCCGCA;-!Klf4#MA0039.1;2;0.0206635;9.83582;0.717625;8;TTCCGCTTC;CCTTCCTTTA;-!GABPA#MA0062.2;-1;0.020999;9.99551;0.717625;8;TTCCGCTTC;GCCACTTCCGG;-
}}
}}

Latest revision as of 14:10, 7 September 2012

Full Name: TTYCGSTTC,motif442,CNhs13473,T:597.0(9.87%),B:4689.2(5.89%),P:1e-32

Motif matrix
POACGT
125.67119.70119.701531.927
212.53720.895186.861376.707
325.074253.72584.177234.024
4111.639408.94542.98433.432
5145.66858.506392.2290.597
693.729250.143201.78651.342
730.447220.29320.298325.962
8149.84731.04428.059388.05
9109.848284.76944.775157.608

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
ELK1#MA0028.118.15036e-050.03879570.07709589TTCCGCTTCCTTCCGGCTC-
IRF1#MA0050.120.001379290.656540.5647219TTCCGCTTCGGTTTCACTTTC-
YBR239C#MA0420.110.001896840.9028970.5647217TTCCGCTTCGTTCCGGT-
id1#MA0120.110.003026361.440550.5647219TTCCGCTTCTTTTCCTTTTCG+
STAT1#MA0137.130.003338691.589220.5647219TTCCGCTTCCAGTTTCATTTTCC-
SPIB#MA0081.100.003668551.746230.5647217TTCCGCTTCTTCCTCT-
HAL9#MA0311.100.004179061.989230.5647215TTCCGCTTCTTCCG-
LYS14#MA0325.120.006026312.868520.6490626TTCCGCTTCAATTCCGG-
IXR1#MA0323.160.006611383.147020.6490629TTCCGCTTCCCCCGCTTCCGGCTT-
IRF2#MA0051.170.008126623.868270.6490629TTCCGCTTCGTTTTGCTTTCACTTTCC-
Eip74EF#MA0026.110.008589034.088380.6490626TTCCGCTTCCTTCCGG-
GABPA#MA0062.230.008807194.192220.6490627TTCCGCTTCCTCTTCCGGT-
HMG-I/Y#MA0045.140.01096085.217330.6490629TTCCGCTTCGTTTTTCCATTTGTTG-
ASG1#MA0275.100.01152215.484510.6490626TTCCGCTTCTTCCGG-
ELK4#MA0076.120.01228485.847570.6490627TTCCGCTTCACTTCCGGT-
SPI1#MA0080.110.0133296.344590.6490625TTCCGCTTCCTTCCG-
STB3#MA0390.1100.01351376.432530.6490629TTCCGCTTCGTCCAAAATTTTTCACTCTGG+
Su(H)#MA0085.110.01398766.658120.6490629TTCCGCTTCATCTCGGTTCCCACAA-
NDT80#MA0343.100.01531987.292240.6490629TTCCGCTTCTTGCGTTTTTGTGGCCGGAAA-
SWI4#MA0401.100.01550257.379170.6490628TTCCGCTTCTTTCGCGT-
MZF1_5-13#MA0057.100.01565657.452480.6490629TTCCGCTTCTTCCCCCTAC-
Pax5#MA0014.130.01606127.645140.6490629TTCCGCTTCCCGCTACGCTTCAGTGCTCT-
Tal1::Gata1#MA0140.160.01622097.721160.6490629TTCCGCTTCCTTATCTGTCCCCACCAG-
run::Bgb#MA0242.100.01646817.838820.6490629TTCCGCTTCTTGCGGTTA-
RDR1#MA0360.110.01760798.381380.6662277TTCCGCTTCGTTCCGCA-
Klf4#MA0039.120.02066359.835820.7176258TTCCGCTTCCCTTCCTTTA-
GABPA#MA0062.2-10.0209999.995510.7176258TTCCGCTTCGCCACTTCCGG-
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