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MacroAPE 1083:AAAAGCACTGC,motif961: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;443.564;94.248;38.896;171.292!2;706.86;0.748;21.692;18.7!3;530.332;121.924;66.572;29.172!4;603.636;44.88;44.88;54.604!5;34.408;77.792;613.36...")
 
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842!10789-110H6;0.176846!10828-111C9;0.403819!10788-110H5;0.16001!10792-110H9;0.119211!10765-110E9;0.118036!10829-111D1;0.0712616!10830-111D2;0.375556!10831-111D3;0.072447!10832-111D4;0.320683!10833-111D5;0.0366543!10764-110E8;0.0706494!10770-110F5;0.131794!10399-106A3;0.249789!10400-106A4;0.0231304!10405-106A9;0.0183595!10834-111D6;0.00800307!10835-111D7;0.123161!10836-111D8;0.0460694!10837-111D9;0.241984!10699-109G6;0.0424159!10802-111A1;0.06462!10796-110I4;0.087287!10010-101C1;0.354919!10810-111A9;0.270067!10421-106C7;0.624947!10708-109H6;0.253549!12235-129G3;0.836426!12236-129G4;0.852043!12237-129G5;0.362587!10167-103B5;0.872585!10151-102I7;0.0315524!10428-106D5;0.0200935!10795-110I3;0.827868!10805-111A4;0.223095!10052-101G7;0.711565!10189-103D9;0.150678!10589-108D4;0.624623!10425-106D2;0.71928!10427-106D4;0.348742!10702-109G9;0.228732!10432-106D9;0.0321074!10496-107C1;0.315205!10718-109I7;0.824978!10011-101C2;0.562721!10053-101G8;0.0741797!10686-109F2;0.534015!10084-102B3;0.88253!10012-101C3;0.00817733!10085-102B4;0.0127639!10482-107A5;0.00225114!10419-106C5;0.741083!10080-102A8;0.42759!10760-110E4;0.723585!10709-109H7;0.598826!10710-109H8;0.283471!10703-109H1;0.230203!10719-109I8;0.397328!10642-109A3;0.569542!10177-103C6;0.413408!10164-103B2;0.0302458!10173-103C2;0.0133453!10166-103B4;0.0312963!10083-102B2;0.0338165!10188-103D8;0.0259799!10552-107I3;0.00865977!10553-107I4;0.420595!10013-101C4;0.763839!10536-107G5;0.384904!10618-108G6;0.346772!10423-106C9;0.374315!10785-110H2;0.225605!12238-129G6;0.150763!12239-129G7;0.584348!12240-129G8;0.601759!10416-106C2;0.505521!10801-110I9;0.0838576!10766-110F1;0.0853997!10824-111C5;0.159831!10825-111C6;0.418624!10826-111C7;0.362756!10454-106G4;0.407997!10409-106B4;0.566321!10638-108I8;0.117032!10636-108I6;0.55674!10513-107D9;0.340168!10420-106C6;0.639109!10082-102B1;0.593358!10014-101C5;0.452191!10070-101I7;0.262698!10452-106G2;0.0708981!10453-106G3;0.644874!10449-106F8;0.508828!10042-101F6;0.370386!10069-101I6;0.042058!10193-103E4;0.0051659!10631-108I1;0.0155099!10438-106E6;0.162146!10488-107B2;0.794662!10196-103E7;0.621126!10071-101I8;0.595529!10071-101I8;0.0132578!10041-101F5;0.00371576!10451-106G1;0.331605!10450-106F9;0.520577!10604-108F1;0.473576!10605-108F2;0.339179!10606-108F3;0.504888!10603-108E9;0.599987!10497-107C2;0.675485!10448-106F7;0.199234!10643-109A4;0.85271!10426-106D3;0.278142!10431-106D8;0.717965!10197-103E8;0.953573!10443-106F2;0.346796!10815-111B5;0.675143!10816-111B6;0.932631!10817-111B7;0.82087!10015-101C6;0.924463!10410-106B5;0.152072!10054-101G9;0.286661!10758-110E2;0.00160263!10711-109H9;0.953147!10040-101F4;0.495461!10470-106I2;0.0138601!10415-106C1;0.443981!10198-103E9;0.60246!10614-108G2;0.405676!10612-108F9;0.76503!10549-107H9;0.748503!10615-108G3;0.981768!10487-107B1;0.551953!10433-106E1;0.197194!10688-109F4;0.621477!10444-106F3;0.401388!10444-106F3;0.588767!10485-107A8;0.750694!10413-106B8;0.610829!10175-103C4;0.700994!10161-103A8;0.0364451!12131-128D7;0.0820338!10624-108H3;0.0742943!10712-109I1;0.23688!10205-103F7;0.235322!10206-103F8;0.0170708!10207-103F9;0.0142457!10050-101G5;0.457584!10051-101G6;0.304553!10016-101C7;0.124783!10046-101G1;0.0757259!10778-110G4;0.0444448!10633-108I3;0.292233!10818-111B8;0.55873!10819-111B9;0.270964!10820-111C1;0.243305!10484-107A7;0.215184!10808-111A7;0.281031!10169-103B7;0.299876!10153-102I9;0.0122278!13425-144D5;0.0289665!13433-144E4;0.846073!13437-144E8;0.593948!11904-125F5;0.908475!11905-125F6;0.367603!10039-101F3;0.448156!10791-110H8;0.0139726!10017-101C8;0.91936!10045-101F9;0.835199!10509-107D5;0.897512!10839-111E2;0.267996!10692-109F8;0.188101!10079-102A7;0.934028!10078-102A6;0.0358972!10721-110A1;0.0398819!10569-108B2;0.973139!10570-108B3;0.938838!10571-108B4;0.776271!10647-109A8;0.990921!10752-110D5;0.804495!10782-110G8;0.0218698!10726-110A6;0.361957!10018-101C9;0.63193!10086-102B5;0.89096!10182-103D2;0.734726!10165-103B3;0.0596434!10499-107C4;0.0755541!10408-106B3;0.22473!10019-101D1;0.341144!10068-101I5;0.673013!10075-102A3;0.877684!10077-102A5;0.51622!10727-110A7;0.931465!10775-110G1;0.364631!10412-106B7;0.23064!12231-129F8;0.573344!12232-129F9;0.133047!12233-129G1;0.0644541!12234-129G2;0.135269!10414-106B9;0.269347!10170-103B8;0.0873398!10183-103D3;0.0171601!10150-102I6;0.011158!10174-103C3;0.0242388!10155-103A2;0.0639368!10038-101F2;0.0755243!10838-111E1;0.0634862!10759-110E3;0.521304!10514-107E1;0.431361!10465-106H6;0.0584562!10691-109F7;0.00406876!10843-111E6;0.954249!10844-111E7;0.875692!11747-123G1;0.279273!11748-123G2;0.80799!11749-123G3;0.918678!11750-123G4;0.555713!11751-123G5;0.959286!11840-124H4;0.513685!11752-123G6;0.924044!11753-123G7;0.759141!11754-123G8;0.672747!11755-123G9;0.530521!11756-123H1;0.227986!11833-124G6;0.814799!11760-123H5;0.152729!11836-124G9;0.49596!11758-123H3;0.969744!11835-124G8;0.82018!11762-123H7;0.803589!11838-124H2;0.43986!11757-123H2;0.341944!11759-123H4;0.483774!11761-123H6;0.368861!11842-124H6;0.764541!11837-124H1;0.568556!10568-108B1;0.912702!13230-141I8;0.644807!13231-141I9;0.173081!10696-109G3;0.189942!10493-107B7;0.305005!10494-107B8;0.508794!10850-111F4;0.391754!10851-111F5;0.771886!10852-111F6;0.974305!10853-111F7;0.91467!10854-111F8;0.99997!10855-111F9;0.854494!10856-111G1;0.204321!10847-111F1;0.766478!10846-111E9;0.191861!10848-111F2;0.741342!10845-111E8;0.770564!10857-111G2;0.189583!10858-111G3;0.744783!10156-103A3;0.855119!11901-125F2;0.0269177!11902-125F3;0.159387!11903-125F4;0.190157!10689-109F5;0.129708!10648-109A9;0.496307!10784-110H1;0.45152!10744-110C6;0.671329!10772-110F7;0.971099!10474-106I6;0.0699173!10600-108E6;0.199733!10684-109E9;0.588653!12226-129F3;0.281741!12227-129F4;0.873061!10508-107D4;0.150757!10539-107G8;0.245207!10607-108F4;0.0865162!10555-107I6;0.85777!10774-110F9;0.193936!10637-108I7;0.507529!10663-109C6;0.780257!10728-110A8;0.616665!10729-110A9;0.749632!10430-106D7;0.0460659!10730-110B1;0.259576!10813-111B3;0.614199!10812-111B2;0.188537!10037-101F1;0.816123!10172-103C1;0.0173558!10163-103B1;0.0265819!10076-102A4;0.0313119!10073-102A1;0.0105384!10036-101E9;0.0029665!10195-103E6;0.0135196!10277-104E7;0.0121557!10434-106E2;0.359383!10550-107I1;0.986765!10545-107H5;0.609077!10544-107H4;0.736192!10704-109H2;0.97424!10510-107D6;0.306715!10558-107I9;0.711988!10020-101D2;0.468941!10732-110B3;0.478506!10049-101G4;0.998215!10698-109G5;0.283509!10437-106E5;0.267976!10417-106C3;0.391858!10035-101E8;0.211264!10171-103B9;0.0157642!10157-103A4;0.0149223!10034-101E7;0.022517!10072-101I9;0.0174739!10199-103F1;0.00433225!10200-103F2;0.522623!10697-109G4;0.0429194!10723-110A3;0.857626!10179-103C8;0.828488!10160-103A7;0.182808!10180-103C9;0.157562!10162-103A9;0.827874!10021-101D3;0.564079!10840-111E3;0.830288!10706-109H4;0.354883!10033-101E6;0.250914!10032-101E5;0.0468652!10490-107B4;0.0130421!10439-106E7;0.361114!10022-101D4;0.832519!10176-103C5;0.287448!10469-106I1;0.0168395!10067-101I4;0.502681!10411-106B6;0.00170853!10471-106I3;0.205057!10030-101E3;0.484948!10475-106I7;0.0175109!10787-110H4;0.561686!10477-106I9;0.686063!10695-109G2;0.976776!11771-123I7;0.781309!11772-123I8;0.947738!11773-123I9;0.426196!10093-102C3;0.56876!10442-106F1;0.831726!10442-106F1;0.962174!10201-103F3;0.813024!10639-108I9;0.539186!11843-124H7;0.676318!11841-124H5;0.510202!10693-109F9;0.888754!10436-106E4;0.34756!10483-107A6;0.0705897!10282-104F3;0.103988!10023-101D5;0.11562!10066-101I3;0.029045!10065-101I2;0.00239684!10800-110I8;0.0367923!10610-108F7;0.900912!10841-111E4;0.576834!10541-107H1;0.442325!10842-111E5;0.816266!10562-108A4;0.375364!10024-101D6;0.4894!10064-101I1;0.256331!10609-108F6;0.00774966!10048-101G3;0.306273!10781-110G7;0.0949549!10181-103D1;0.927457!10159-103A6;0.0916782!10056-101H2;0.173274!10737-110B8;0.0159434!10025-101D7;0.496141!10044-101F8;0.770233!10424-106D1;0.863613!10463-106H4;0.170823!10616-108G4;0.841703!10486-107A9;0.728567!10062-101H8;0.560883!10202-103F4;0.0750131!10158-103A5;0.682671!10441-106E9;0.265193!10031-101E4;0.824832!10063-101H9;0.0161749!10063-101H9;0.00380196!11763-123H8;0.00820838!11765-123I1;0.312615!11768-123I4;0.219843!10807-111A6;0.222986!10790-110H7;0.784836!10798-110I6;0.780535!10786-110H3;0.681843!10591-108D6;0.781513!10593-108D8;0.97566!10590-108D5;0.867129!10026-101D8;0.715144!10096-102C6;0.638365!10168-103B6;0.840408!10154-103A1;0.027649!10209-103G2;0.0437915!10061-101H7;0.138731!10027-101D9;0.0490907!10043-101F7;0.503488!10783-110G9;0.974563!10028-101E1;0.487242!10060-101H6;0.962331!10203-103F5;0.373351!10059-101H5;0.180411!10047-101G2;0.01587!10029-101E2;0.799793!10058-101H4;0.917638!10418-106C4;0.102756!10492-107B6;0.93355!10694-109G1;0.787163!10797-110I5;0.684772!10057-101H3;0.178108!10100-102D1;0.0105929!10055-101H1;0.452428!10204-103F6;0.0970521!10191-103E2;0.618984!10563-108A5;0.230092
|name=AAAAGCACTGC,motif961,CNhs10641,T:748.0(21.57%),B:9310.8(14.67%),P:1e-27
|name=AAAAGCACTGC,motif961,CNhs10641,T:748.0(21.57%),B:9310.8(14.67%),P:1e-27
|tomtom_result=Gfi#MA0038.1;0;0.000842851;0.401197;0.35329;10;AAAAGCACTGC;CAAATCACTG;+!Dof2#MA0020.1;-1;0.000863182;0.410875;0.35329;6;AAAAGCACTGC;AAAGCA;+!MNB1A#MA0053.1;-1;0.00111359;0.530069;0.35329;5;AAAAGCACTGC;AAAGC;+!PBF#MA0064.1;-1;0.00180688;0.860076;0.429929;5;AAAAGCACTGC;AAAGC;+!RUNX1#MA0002.2;-1;0.0039986;1.90334;0.761141;10;AAAAGCACTGC;AAACCACAGAC;-!Dof3#MA0021.1;-1;0.00544748;2.593;0.785034;6;AAAAGCACTGC;AAAGCG;+!TBP#MA0108.2;4;0.0065986;3.14093;0.785034;11;AAAAGCACTGC;GTATAAAAGGCGGGG;+!TBP#MA0108.2;4;0.0065986;3.14093;0.785034;11;AAAAGCACTGC;GTATAAAAGGCGGGG;+!Pax5#MA0014.1;-1;0.0103556;4.92925;0.999747;10;AAAAGCACTGC;GGAGCACTGAAGCGTAACCG;+!AZF1#MA0277.1;1;0.0178146;8.47977;0.999747;8;AAAAGCACTGC;AAAAAGAAA;+
}}
}}

Latest revision as of 14:11, 7 September 2012

Full Name: AAAAGCACTGC,motif961,CNhs10641,T:748.0(21.57%),B:9310.8(14.67%),P:1e-27

Motif matrix
POACGT
1443.56494.24838.896171.292
2706.860.74821.69218.7
3530.332121.92466.57229.172
4603.63644.8844.8854.604
534.40877.792613.3622.44
655.352691.1520.7480.748
7667.21623.18832.16425.432
8103.972496.672119.6827.676
9110.70444.13218.7574.464
1062.83279.288596.9048.976
11181.016339.592130.997.24

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Gfi#MA0038.100.0008428510.4011970.3532910AAAAGCACTGCCAAATCACTG+
Dof2#MA0020.1-10.0008631820.4108750.353296AAAAGCACTGCAAAGCA+
MNB1A#MA0053.1-10.001113590.5300690.353295AAAAGCACTGCAAAGC+
PBF#MA0064.1-10.001806880.8600760.4299295AAAAGCACTGCAAAGC+
RUNX1#MA0002.2-10.00399861.903340.76114110AAAAGCACTGCAAACCACAGAC-
Dof3#MA0021.1-10.005447482.5930.7850346AAAAGCACTGCAAAGCG+
TBP#MA0108.240.00659863.140930.78503411AAAAGCACTGCGTATAAAAGGCGGGG+
TBP#MA0108.240.00659863.140930.78503411AAAAGCACTGCGTATAAAAGGCGGGG+
Pax5#MA0014.1-10.01035564.929250.99974710AAAAGCACTGCGGAGCACTGAAGCGTAACCG+
AZF1#MA0277.110.01781468.479770.9997478AAAAGCACTGCAAAAAGAAA+
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