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MacroAPE 1083:13-CBTACGCAA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;173.734;376.618;20.988;11.66!2;12.243;164.406;217.459;189.475!3;18.656;78.705;32.648;452.991!4;456.489;6.996;44.308;75.207!5;23.32;455.906;2...")
 
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0429-106D6;0.529962!10464-106H5;0.248102!10827-111C8;0.316311!10789-110H6;0.555836!10828-111C9;0.384555!10788-110H5;0.285588!10792-110H9;0.251638!10765-110E9;0.688024!10829-111D1;0.866913!10830-111D2;0.0635793!10831-111D3;0.461096!10832-111D4;0.510826!10833-111D5;0.375165!10764-110E8;0.245695!10770-110F5;0.0540384!10399-106A3;0.145575!10400-106A4;0.214681!10405-106A9;0.16726!10834-111D6;0.162872!10835-111D7;0.314995!10836-111D8;0.410137!10837-111D9;0.228546!10699-109G6;0.375469!10802-111A1;0.582078!10796-110I4;0.228403!10010-101C1;0.135685!10810-111A9;0.0512821!10421-106C7;0.215646!10708-109H6;0.126305!12235-129G3;0.144513!12236-129G4;0.963818!12237-129G5;0.385758!10167-103B5;0.408696!10151-102I7;0.83758!10428-106D5;0.688629!10795-110I3;0.449484!10805-111A4;0.0397935!10052-101G7;0.113209!10189-103D9;0.0310833!10589-108D4;0.219654!10425-106D2;0.0616417!10427-106D4;0.850627!10702-109G9;0.0639274!10432-106D9;0.447923!10496-107C1;0.00329901!10718-109I7;0.0320668!10011-101C2;0.103022!10053-101G8;0.0817327!10686-109F2;0.639933!10084-102B3;0.00153718!10012-101C3;0.75048!10085-102B4;0.608725!10482-107A5;0.493603!10419-106C5;0.199551!10080-102A8;0.138803!10760-110E4;0.103565!10709-109H7;9.97123e-05!10710-109H8;0.170081!10703-109H1;0.790641!10719-109I8;0.0779138!10642-109A3;0.0957146!10177-103C6;0.705609!10164-103B2;0.690219!10173-103C2;0.826315!10166-103B4;0.771126!10083-102B2;0.917777!10188-103D8;0.982822!10552-107I3;0.566173!10553-107I4;0.0571369!10013-101C4;0.345471!10536-107G5;0.0429071!10618-108G6;0.485682!10423-106C9;0.0196291!10785-110H2;0.0334552!12238-129G6;0.058232!12239-129G7;0.247368!12240-129G8;0.115185!10416-106C2;0.215269!10801-110I9;0.47823!10766-110F1;0.415441!10824-111C5;0.33535!10825-111C6;0.0564113!10826-111C7;0.0602875!10454-106G4;0.0582749!10409-106B4;0.314535!10638-108I8;0.196244!10636-108I6;0.00275387!10513-107D9;0.0148561!10420-106C6;0.215187!10082-102B1;0.387355!10014-101C5;0.135929!10070-101I7;0.311665!10452-106G2;0.0548946!10453-106G3;0.503153!10449-106F8;0.433737!10042-101F6;0.479541!10069-101I6;0.386577!10193-103E4;0.00280332!10631-108I1;0.959536!10438-106E6;0.212147!10488-107B2;0.0880238!10196-103E7;0.00341369!10071-101I8;0.230578!10071-101I8;0.0245549!10041-101F5;0.431629!10451-106G1;0.370877!10450-106F9;0.127757!10604-108F1;0.19178!10605-108F2;0.00257315!10606-108F3;0.00719756!10603-108E9;0.00277187!10497-107C2;0.0129937!10448-106F7;0.250321!10643-109A4;0.286459!10426-106D3;0.00278999!10431-106D8;0.0303735!10197-103E8;0.13479!10443-106F2;0.0862935!10815-111B5;0.466523!10816-111B6;0.151882!10817-111B7;0.079973!10015-101C6;0.202829!10410-106B5;0.072319!10054-101G9;0.804453!10758-110E2;0.111844!10711-109H9;0.133745!10040-101F4;0.443971!10470-106I2;0.624826!10415-106C1;0.26559!10198-103E9;0.0303342!10614-108G2;0.0843587!10612-108F9;0.547994!10549-107H9;0.053847!10615-108G3;0.145501!10487-107B1;0.394975!10433-106E1;0.0287706!10688-109F4;0.016786!10444-106F3;0.154103!10444-106F3;0.742439!10485-107A8;0.596207!10413-106B8;0.601472!10175-103C4;0.455522!10161-103A8;0.695373!12131-128D7;0.735449!10624-108H3;0.514239!10712-109I1;0.654396!10205-103F7;0.649499!10206-103F8;0.0326073!10207-103F9;0.0165199!10050-101G5;0.875327!10051-101G6;0.168314!10016-101C7;0.0349939!10046-101G1;0.0542321!10778-110G4;0.000300664!10633-108I3;0.692099!10818-111B8;0.0742921!10819-111B9;0.00826235!10820-111C1;0.0125109!10484-107A7;0.00457988!10808-111A7;0.907626!10169-103B7;0.0557137!10153-102I9;0.676345!13425-144D5;0.555976!13433-144E4;0.411714!13437-144E8;0.395004!11904-125F5;0.620595!11905-125F6;0.893003!10039-101F3;0.756178!10791-110H8;0.672148!10017-101C8;0.759808!10045-101F9;0.175071!10509-107D5;0.0111858!10839-111E2;0.515778!10692-109F8;0.0949548!10079-102A7;0.20444!10078-102A6;0.00667176!10721-110A1;0.0155619!10569-108B2;0.084868!10570-108B3;0.345781!10571-108B4;0.577983!10647-109A8;0.118638!10752-110D5;0.817133!10782-110G8;0.0176651!10726-110A6;0.281143!10018-101C9;0.946325!10086-102B5;0.796127!10182-103D2;0.860337!10165-103B3;0.495119!10499-107C4;0.764822!10408-106B3;0.250123!10019-101D1;0.186837!10068-101I5;0.255907!10075-102A3;0.0210917!10077-102A5;0.0655953!10727-110A7;0.771208!10775-110G1;0.0261524!10412-106B7;0.650377!12231-129F8;0.220407!12232-129F9;0.572343!12233-129G1;0.274869!12234-129G2;0.323392!10414-106B9;0.0752527!10170-103B8;0.0874818!10183-103D3;0.666156!10150-102I6;0.517732!10174-103C3;0.610966!10155-103A2;0.298201!10038-101F2;0.435977!10838-111E1;0.482876!10759-110E3;0.744546!10514-107E1;0.0202838!10465-106H6;0.879093!10691-109F7;0.59321!10843-111E6;0.202763!10844-111E7;0.645189!11747-123G1;0.838789!11748-123G2;0.0200473!11749-123G3;0.03004!11750-123G4;0.0826905!11751-123G5;0.10446!11840-124H4;0.114043!11752-123G6;0.155473!11753-123G7;0.636498!11754-123G8;0.190797!11755-123G9;0.0798926!11756-123H1;0.446685!11833-124G6;0.750191!11760-123H5;0.852677!11836-124G9;0.956024!11758-123H3;0.0873574!11835-124G8;0.676217!11762-123H7;0.53671!11838-124H2;0.893202!11757-123H2;0.643925!11759-123H4;0.917341!11761-123H6;0.783957!11842-124H6;0.922707!11837-124H1;0.405971!10568-108B1;0.757658!13230-141I8;0.0823908!13231-141I9;0.0274251!10696-109G3;0.00759749!10493-107B7;0.308919!10494-107B8;0.0297218!10850-111F4;0.268926!10851-111F5;0.174524!10852-111F6;0.550803!10853-111F7;0.904579!10854-111F8;0.427047!10855-111F9;0.0664904!10856-111G1;0.786051!10847-111F1;0.354937!10846-111E9;0.756921!10848-111F2;0.219924!10845-111E8;0.125611!10857-111G2;0.179444!10858-111G3;0.530041!10156-103A3;0.287108!11901-125F2;0.642215!11902-125F3;0.602209!11903-125F4;0.593325!10689-109F5;0.478929!10648-109A9;0.643584!10784-110H1;0.603589!10744-110C6;0.0991241!10772-110F7;0.856479!10474-106I6;0.127211!10600-108E6;0.0629984!10684-109E9;0.634336!12226-129F3;0.124014!12227-129F4;0.00285941!10508-107D4;0.605029!10539-107G8;0.759395!10607-108F4;0.941466!10555-107I6;0.376736!10774-110F9;0.706133!10637-108I7;0.516028!10663-109C6;0.841293!10728-110A8;0.690608!10729-110A9;0.608265!10430-106D7;0.350755!10730-110B1;0.402073!10813-111B3;0.424324!10812-111B2;0.0118708!10037-101F1;0.0798308!10172-103C1;0.597579!10163-103B1;0.631959!10076-102A4;0.58227!10073-102A1;0.645968!10036-101E9;0.392723!10195-103E6;0.68347!10277-104E7;0.601767!10434-106E2;0.83302!10550-107I1;0.00696599!10545-107H5;0.0594011!10544-107H4;0.162253!10704-109H2;0.0084759!10510-107D6;0.611061!10558-107I9;0.204763!10020-101D2;0.658217!10732-110B3;0.301538!10049-101G4;0.73319!10698-109G5;0.172348!10437-106E5;0.0299593!10417-106C3;0.205368!10035-101E8;0.520193!10171-103B9;0.70023!10157-103A4;0.587775!10034-101E7;0.674342!10072-101I9;0.612995!10199-103F1;0.262368!10200-103F2;0.906246!10697-109G4;0.0351755!10723-110A3;0.739157!10179-103C8;0.124029!10160-103A7;0.32948!10180-103C9;0.269908!10162-103A9;0.889287!10021-101D3;0.825522!10840-111E3;0.216823!10706-109H4;0.212144!10033-101E6;0.529757!10032-101E5;0.632839!10490-107B4;0.637217!10439-106E7;0.0215554!10022-101D4;0.0427173!10176-103C5;0.135812!10469-106I1;0.769294!10067-101I4;0.257678!10411-106B6;0.0176733!10471-106I3;0.000423986!10030-101E3;0.0840979!10475-106I7;0.0870771!10787-110H4;0.475244!10477-106I9;0.468696!10695-109G2;0.0912165!11771-123I7;0.00636116!11772-123I8;0.533626!11773-123I9;0.864802!10093-102C3;0.650903!10442-106F1;0.936106!10442-106F1;0.615446!10201-103F3;0.528226!10639-108I9;0.205485!11843-124H7;0.0976583!11841-124H5;0.0893244!10693-109F9;0.366355!10436-106E4;0.052451!10483-107A6;0.210155!10282-104F3;0.154296!10023-101D5;0.100856!10066-101I3;0.174267!10065-101I2;0.000896122!10800-110I8;0.000659384!10610-108F7;0.2776!10841-111E4;0.236065!10541-107H1;0.592998!10842-111E5;0.0951314!10562-108A4;0.382976!10024-101D6;0.0494852!10064-101I1;0.264903!10609-108F6;0.0170811!10048-101G3;0.0615408!10781-110G7;0.0686384!10181-103D1;0.036344!10159-103A6;0.265496!10056-101H2;0.611995!10737-110B8;0.0502191!10025-101D7;0.382217!10044-101F8;0.836169!10424-106D1;0.0322075!10463-106H4;0.126657!10616-108G4;0.0986564!10486-107A9;0.048683!10062-101H8;0.0662136!10202-103F4;0.26002!10158-103A5;0.329031!10441-106E9;0.67837!10031-101E4;0.479882!10063-101H9;0.644942!10063-101H9;0.306399!11763-123H8;0.10412!11765-123I1;0.00174994!11768-123I4;0.124392!10807-111A6;0.0486266!10790-110H7;0.299908!10798-110I6;0.256712!10786-110H3;0.124037!10591-108D6;0.145675!10593-108D8;0.110689!10590-108D5;0.0152449!10026-101D8;0.20683!10096-102C6;0.210004!10168-103B6;0.849846!10154-103A1;0.541214!10209-103G2;0.744803!10061-101H7;0.0393451!10027-101D9;0.00114295!10043-101F7;0.757647!10783-110G9;0.742087!10028-101E1;0.335805!10060-101H6;0.635329!10203-103F5;0.00024027!10059-101H5;0.0378526!10047-101G2;0.004364!10029-101E2;0.2174!10058-101H4;0.668677!10418-106C4;0.0174292!10492-107B6;0.0525982!10694-109G1;0.0750005!10797-110I5;0.126654!10057-101H3;0.104887!10100-102D1;0.0252023!10055-101H1;0.0382495!10204-103F6;0.00204918!10191-103E2;0.465247!10563-108A5;0.0282958
|name=13-CBTACGCAA,CNhs11998,BestGuess:CEBPE_f1_HM09(0.675146696744791),T:583.0(15.56%),B:4102.7(9.47%),P:1e-31
|name=13-CBTACGCAA,CNhs11998,BestGuess:CEBPE_f1_HM09(0.675146696744791),T:583.0(15.56%),B:4102.7(9.47%),P:1e-31
|tomtom_result=YAP6#MA0418.1;4;0.00243978;1.16133;0.387031;9;CGTACGCAA;GTCGCTTACGTAATCAGACC;-!HLF#MA0043.1;1;0.00250488;1.19232;0.387031;9;CGTACGCAA;GGTTACGCAATT;+!CIN5#MA0284.1;1;0.00272063;1.29502;0.387031;9;CGTACGCAA;GATTACGTAA;-!CEBPA#MA0102.2;-1;0.00278124;1.32387;0.387031;8;CGTACGCAA;TTTCGCAAT;+!YAP1#MA0415.1;5;0.00314772;1.49832;0.387031;9;CGTACGCAA;ATTTGCTTACGTAAGCTCGT;+!vvl#MA0254.1;-2;0.00342776;1.63161;0.387031;6;CGTACGCAA;TATGCA;+!YAP3#MA0416.1;-2;0.00431803;2.05538;0.387031;7;CGTACGCAA;TACGTAAT;-!gt#MA0447.1;0;0.00450165;2.14279;0.387031;9;CGTACGCAA;ATTACGTAAT;+!mab-3#MA0262.1;0;0.0050375;2.39785;0.397009;9;CGTACGCAA;AATTCGCAACATT;-!Cebpa#MA0102.1;-1;0.00653363;3.11001;0.475311;8;CGTACGCAA;TTTCGCAATCTT;+!FHL1#MA0295.1;-2;0.00761013;3.62242;0.51408;7;CGTACGCAA;GACGCAAA;+!Egr1#MA0162.1;3;0.00946527;4.50547;0.596772;8;CGTACGCAA;CCGCCCACGCA;-!Arnt::Ahr#MA0006.1;-2;0.0113346;5.39525;0.630554;6;CGTACGCAA;CACGCA;-!z#MA0255.1;1;0.0135527;6.45107;0.63878;9;CGTACGCAA;AATCACTCAA;-!fkh#MA0446.1;-1;0.0141842;6.75167;0.63878;8;CGTACGCAA;TTAAGCAAACA;-!nub#MA0453.1;-2;0.0164511;7.83071;0.676445;7;CGTACGCAA;TATGCAAATTAG;+
}}
}}

Latest revision as of 14:15, 7 September 2012

Full Name: 13-CBTACGCAA,CNhs11998,BestGuess:CEBPE_f1_HM09(0.675146696744791),T:583.0(15.56%),B:4102.7(9.47%),P:1e-31

Motif matrix
POACGT
1173.734376.61820.98811.66
212.243164.406217.459189.475
318.65678.70532.648452.991
4456.4896.99644.30875.207
523.32455.90625.65278.122
634.9827.401464.06856.551
755.385398.77230.89997.944
8506.62722.15425.65228.567
9343.38720.98864.13154.495

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
YAP6#MA0418.140.002439781.161330.3870319CGTACGCAAGTCGCTTACGTAATCAGACC-
HLF#MA0043.110.002504881.192320.3870319CGTACGCAAGGTTACGCAATT+
CIN5#MA0284.110.002720631.295020.3870319CGTACGCAAGATTACGTAA-
CEBPA#MA0102.2-10.002781241.323870.3870318CGTACGCAATTTCGCAAT+
YAP1#MA0415.150.003147721.498320.3870319CGTACGCAAATTTGCTTACGTAAGCTCGT+
vvl#MA0254.1-20.003427761.631610.3870316CGTACGCAATATGCA+
YAP3#MA0416.1-20.004318032.055380.3870317CGTACGCAATACGTAAT-
gt#MA0447.100.004501652.142790.3870319CGTACGCAAATTACGTAAT+
mab-3#MA0262.100.00503752.397850.3970099CGTACGCAAAATTCGCAACATT-
Cebpa#MA0102.1-10.006533633.110010.4753118CGTACGCAATTTCGCAATCTT+
FHL1#MA0295.1-20.007610133.622420.514087CGTACGCAAGACGCAAA+
Egr1#MA0162.130.009465274.505470.5967728CGTACGCAACCGCCCACGCA-
Arnt::Ahr#MA0006.1-20.01133465.395250.6305546CGTACGCAACACGCA-
z#MA0255.110.01355276.451070.638789CGTACGCAAAATCACTCAA-
fkh#MA0446.1-10.01418426.751670.638788CGTACGCAATTAAGCAAACA-
nub#MA0453.1-20.01645117.830710.6764457CGTACGCAATATGCAAATTAG+
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