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MacroAPE 1083:16-RBYKBTWACG: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;139.812;56.364;114.192;55.632!2;0.366;141.276;98.454;126.27!3;91.134;122.976;0.366;151.524!4;23.424;41.724;154.086;146.766!5;0.366;131.76;11...")
 
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87!12182-129A4;0.347176!12183-129A5;0.207163!12184-129A6;0.251116!10809-111A8;0.654246!10597-108E3;0.00570875!10717-109I6;9.24207e-06!10455-106G5;0.172854!10534-107G3;0.000154038!10429-106D6;0.00305075!10464-106H5;0.000681864!10827-111C8;0.000162671!10789-110H6;0.00393968!10828-111C9;0.0628069!10788-110H5;0.25418!10792-110H9;0.374831!10765-110E9;0.035982!10829-111D1;0.00436272!10830-111D2;0.000521111!10831-111D3;0.00242233!10832-111D4;0.00667984!10833-111D5;0.00407549!10764-110E8;0.00759712!10770-110F5;0.0306537!10399-106A3;0.0564164!10400-106A4;0.000642256!10405-106A9;0.000228256!10834-111D6;0.000532762!10835-111D7;0.00679721!10836-111D8;0.000321561!10837-111D9;0.00703007!10699-109G6;0.0360917!10802-111A1;0.0166354!10796-110I4;0.00377041!10010-101C1;0.00308387!10810-111A9;6.0986e-08!10421-106C7;6.58781e-08!10708-109H6;0.00143866!12235-129G3;0.0350165!12236-129G4;0.168791!12237-129G5;0.133356!10167-103B5;0.385877!10151-102I7;0.00867209!10428-106D5;0.00216946!10795-110I3;0.185455!10805-111A4;0.000511863!10052-101G7;0.0998729!10189-103D9;3.99749e-08!10589-108D4;1.22617e-09!10425-106D2;0.632605!10427-106D4;0.000157077!10702-109G9;0.000733924!10432-106D9;0.135739!10496-107C1;6.7288e-05!10718-109I7;0.00648787!10011-101C2;0.00205523!10053-101G8;3.68774e-08!10686-109F2;0.797979!10084-102B3;0.975012!10012-101C3;0.000573106!10085-102B4;0.00152022!10482-107A5;0.00115365!10419-106C5;0.0145135!10080-102A8;0.0269391!10760-110E4;1.9438e-08!10709-109H7;0.00598456!10710-109H8;0.0377826!10703-109H1;0.0641619!10719-109I8;0.112239!10642-109A3;0.116475!10177-103C6;0.0999364!10164-103B2;0.00127687!10173-103C2;0.00306797!10166-103B4;0.00501696!10083-102B2;0.000228681!10188-103D8;0.000318526!10552-107I3;0.00231972!10553-107I4;1.8137e-05!10013-101C4;0.0112725!10536-107G5;1.90629e-11!10618-108G6;1.85414e-09!10423-106C9;0.00115388!10785-110H2;0.00663084!12238-129G6;0.00362292!12239-129G7;0.00402718!12240-129G8;0.0248765!10416-106C2;0.104881!10801-110I9;0.00276118!10766-110F1;0.00165924!10824-111C5;0.0288708!10825-111C6;0.000613389!10826-111C7;0.000919889!10454-106G4;0.000196953!10409-106B4;0.00325289!10638-108I8;0.0498648!10636-108I6;0.039027!10513-107D9;0.00320216!10420-106C6;0.0158737!10082-102B1;0.12281!10014-101C5;6.34607e-12!10070-101I7;2.12225e-13!10452-106G2;2.25228e-16!10453-106G3;1.14876e-05!10449-106F8;0.000135528!10042-101F6;0.000554852!10069-101I6;0.00183689!10193-103E4;2.43935e-08!10631-108I1;0.00560392!10438-106E6;0.00968115!10488-107B2;0.00607102!10196-103E7;2.27202e-05!10071-101I8;2.12852e-07!10071-101I8;4.23453e-13!10041-101F5;0.00325269!10451-106G1;6.4423e-05!10450-106F9;0.00152467!10604-108F1;0.0053828!10605-108F2;0.0146304!10606-108F3;0.00138394!10603-108E9;0.00842077!10497-107C2;0.00494454!10448-106F7;0.0257956!10643-109A4;8.92033e-07!10426-106D3;0.00359561!10431-106D8;0.0283245!10197-103E8;0.00998428!10443-106F2;8.60993e-13!10815-111B5;0.6054!10816-111B6;0.000293428!10817-111B7;0.000460153!10015-101C6;0.00044354!10410-106B5;1.07399e-08!10054-101G9;0.00117178!10758-110E2;1.4403e-10!10711-109H9;1.44812e-05!10040-101F4;9.74636e-07!10470-106I2;0.00599902!10415-106C1;0.0354457!10198-103E9;0.00256603!10614-108G2;2.2873e-08!10612-108F9;0.000464866!10549-107H9;0.0192169!10615-108G3;0.000980991!10487-107B1;0.586942!10433-106E1;7.10345e-05!10688-109F4;4.41601e-05!10444-106F3;0.064296!10444-106F3;0.0678185!10485-107A8;0.103609!10413-106B8;0.00389291!10175-103C4;0.00254171!10161-103A8;0.00375947!12131-128D7;0.00678843!10624-108H3;0.0551955!10712-109I1;0.39424!10205-103F7;2.4351e-08!10206-103F8;2.90741e-07!10207-103F9;6.24452e-08!10050-101G5;0.00283378!10051-101G6;5.62723e-07!10016-101C7;3.68563e-06!10046-101G1;8.47681e-05!10778-110G4;3.82057e-07!10633-108I3;0.277355!10818-111B8;0.0545938!10819-111B9;0.00448541!10820-111C1;0.00415607!10484-107A7;0.00401112!10808-111A7;0.0955639!10169-103B7;0.000170438!10153-102I9;0.00241691!13425-144D5;0.00154213!13433-144E4;0.398058!13437-144E8;0.466592!11904-125F5;0.429308!11905-125F6;0.0207811!10039-101F3;0.0988588!10791-110H8;0.00613505!10017-101C8;9.17174e-05!10045-101F9;6.62296e-07!10509-107D5;1.86643e-10!10839-111E2;2.67329e-06!10692-109F8;0.00206731!10079-102A7;0.106373!10078-102A6;3.58561e-07!10721-110A1;8.58763e-06!10569-108B2;7.60741e-05!10570-108B3;0.678184!10571-108B4;0.988457!10647-109A8;0.971861!10752-110D5;1.93081e-05!10782-110G8;0.0424538!10726-110A6;0.60491!10018-101C9;0.00384821!10086-102B5;0.14853!10182-103D2;7.37791e-05!10165-103B3;0.000602033!10499-107C4;0.00332847!10408-106B3;0.000172211!10019-101D1;0.0244331!10068-101I5;5.06262e-07!10075-102A3;2.54624e-06!10077-102A5;3.00891e-07!10727-110A7;0.0102755!10775-110G1;0.000989507!10412-106B7;0.00153929!12231-129F8;0.332293!12232-129F9;0.000596367!12233-129G1;2.58226e-05!12234-129G2;4.46539e-06!10414-106B9;0.000315091!10170-103B8;0.0136212!10183-103D3;0.0126718!10150-102I6;0.00204831!10174-103C3;0.00173811!10155-103A2;0.000435002!10038-101F2;0.000197144!10838-111E1;0.000407919!10759-110E3;0.434332!10514-107E1;0.00161518!10465-106H6;0.00108546!10691-109F7;7.61791e-06!10843-111E6;0.0272968!10844-111E7;0.189065!11747-123G1;0.231328!11748-123G2;0.511493!11749-123G3;0.404781!11750-123G4;0.369819!11751-123G5;0.842796!11840-124H4;0.0716175!11752-123G6;0.0230907!11753-123G7;0.584769!11754-123G8;0.126652!11755-123G9;0.381137!11756-123H1;0.0863744!11833-124G6;0.849288!11760-123H5;0.674582!11836-124G9;0.728304!11758-123H3;0.41795!11835-124G8;0.436264!11762-123H7;0.0110335!11838-124H2;0.674268!11757-123H2;0.111733!11759-123H4;0.845477!11761-123H6;0.510247!11842-124H6;0.281205!11837-124H1;0.177964!10568-108B1;0.0116529!13230-141I8;0.929203!13231-141I9;0.0375563!10696-109G3;0.0214177!10493-107B7;0.643132!10494-107B8;0.000149514!10850-111F4;0.000212776!10851-111F5;0.00028648!10852-111F6;0.0326042!10853-111F7;0.0644484!10854-111F8;0.0419258!10855-111F9;0.124074!10856-111G1;0.161523!10847-111F1;0.167572!10846-111E9;0.140821!10848-111F2;0.0432244!10845-111E8;0.0678204!10857-111G2;0.00225494!10858-111G3;0.00352447!10156-103A3;0.0146096!11901-125F2;0.00206858!11902-125F3;0.0761635!11903-125F4;0.00544646!10689-109F5;0.00135841!10648-109A9;0.194405!10784-110H1;0.0163411!10744-110C6;0.0115234!10772-110F7;0.00321657!10474-106I6;0.017113!10600-108E6;1.17841e-05!10684-109E9;0.0184492!12226-129F3;0.000293645!12227-129F4;0.0101864!10508-107D4;0.00376953!10539-107G8;0.11237!10607-108F4;0.00955671!10555-107I6;0.0508816!10774-110F9;0.01307!10637-108I7;0.0344433!10663-109C6;0.0275088!10728-110A8;0.560322!10729-110A9;0.013495!10430-106D7;0.0600016!10730-110B1;0.033428!10813-111B3;0.00705108!10812-111B2;0.544712!10037-101F1;0.545828!10172-103C1;0.00310355!10163-103B1;0.0040173!10076-102A4;0.00241174!10073-102A1;0.0046595!10036-101E9;0.00319219!10195-103E6;0.00258489!10277-104E7;0.00272986!10434-106E2;0.0417922!10550-107I1;0.00142036!10545-107H5;0.00824668!10544-107H4;0.000552549!10704-109H2;0.00798511!10510-107D6;0.408493!10558-107I9;0.0184389!10020-101D2;0.643517!10732-110B3;7.19709e-07!10049-101G4;0.26491!10698-109G5;0.06!10437-106E5;0.0010009!10417-106C3;0.00405044!10035-101E8;0.0973515!10171-103B9;0.0047555!10157-103A4;0.0122738!10034-101E7;0.00202206!10072-101I9;0.00654708!10199-103F1;0.0109592!10200-103F2;0.000370076!10697-109G4;4.78065e-12!10723-110A3;0.0164952!10179-103C8;0.49043!10160-103A7;0.0116455!10180-103C9;0.00451891!10162-103A9;0.297774!10021-101D3;0.158131!10840-111E3;1.79389e-05!10706-109H4;0.00920025!10033-101E6;0.281363!10032-101E5;0.0017717!10490-107B4;0.00479631!10439-106E7;0.000412664!10022-101D4;0.0711706!10176-103C5;2.59802e-08!10469-106I1;0.00496135!10067-101I4;0.060231!10411-106B6;1.75638e-08!10471-106I3;0.342228!10030-101E3;0.186798!10475-106I7;2.35965e-07!10787-110H4;0.0310298!10477-106I9;2.47431e-05!10695-109G2;0.437055!11771-123I7;0.268084!11772-123I8;0.780011!11773-123I9;0.530675!10093-102C3;0.450493!10442-106F1;2.9397e-05!10442-106F1;0.000753464!10201-103F3;0.00221519!10639-108I9;3.16484e-06!11843-124H7;0.326197!11841-124H5;0.234256!10693-109F9;0.0521726!10436-106E4;0.000246531!10483-107A6;0.0138024!10282-104F3;5.20483e-05!10023-101D5;0.000149465!10066-101I3;2.02171e-06!10065-101I2;1.89993e-08!10800-110I8;1.3552e-13!10610-108F7;0.00673703!10841-111E4;0.0350011!10541-107H1;1.24211e-05!10842-111E5;0.00318316!10562-108A4;0.0263593!10024-101D6;0.794712!10064-101I1;1.26109e-10!10609-108F6;1.04594e-12!10048-101G3;0.0260871!10781-110G7;4.09481e-06!10181-103D1;0.000549492!10159-103A6;0.000411801!10056-101H2;0.00165253!10737-110B8;2.72344e-06!10025-101D7;0.0702584!10044-101F8;0.00194481!10424-106D1;8.91484e-07!10463-106H4;0.000114361!10616-108G4;0.00105718!10486-107A9;9.06962e-06!10062-101H8;1.83589e-06!10202-103F4;7.8158e-08!10158-103A5;1.4962e-08!10441-106E9;0.00690719!10031-101E4;0.199115!10063-101H9;0.00276034!10063-101H9;0.00851629!11763-123H8;8.10112e-19!11765-123I1;0.0157894!11768-123I4;0.00787223!10807-111A6;0.0364611!10790-110H7;0.105736!10798-110I6;0.00194824!10786-110H3;0.00111033!10591-108D6;0.168002!10593-108D8;0.0062387!10590-108D5;0.0726708!10026-101D8;0.015754!10096-102C6;0.000145978!10168-103B6;0.70493!10154-103A1;0.00027295!10209-103G2;0.00382518!10061-101H7;1.56566e-12!10027-101D9;5.78797e-11!10043-101F7;0.554026!10783-110G9;0.000110417!10028-101E1;0.00649878!10060-101H6;0.00599981!10203-103F5;6.71405e-07!10059-101H5;1.13448e-08!10047-101G2;2.10339e-08!10029-101E2;3.17544e-08!10058-101H4;1.91844e-09!10418-106C4;1.19723e-10!10492-107B6;0.0652415!10694-109G1;0.0319175!10797-110I5;0.853143!10057-101H3;0.00897311!10100-102D1;9.43409e-11!10055-101H1;2.09833e-06!10204-103F6;1.28411e-09!10191-103E2;0.000176096!10563-108A5;2.73489e-09
|name=16-RBYKBTWACG,CNhs11998,BestGuess:E4F1_f1_HM09(0.704946787356956),T:366.0(9.77%),B:2267.0(5.23%),P:1e-28
|name=16-RBYKBTWACG,CNhs11998,BestGuess:E4F1_f1_HM09(0.704946787356956),T:366.0(9.77%),B:2267.0(5.23%),P:1e-28
|tomtom_result=YAP6#MA0418.1;0;4.39302e-05;0.0209108;0.0417227;10;ACTGCTAACG;GTCGCTTACGTAATCAGACC;-!ABF1#MA0265.1;5;0.000193618;0.092162;0.091944;10;ACTGCTAACG;ATATCACTTTATACGA;-!YAP1#MA0415.1;1;0.0006328;0.301213;0.200334;10;ACTGCTAACG;ATTTGCTTACGTAAGCTCGT;+!id1#MA0120.1;2;0.00149469;0.711471;0.236596;10;ACTGCTAACG;TTTTCCTTTTCG;+!LEU3#MA0324.1;-1;0.00285717;1.36001;0.387656;9;ACTGCTAACG;CCGGTAACGG;-!GABPA#MA0062.2;0;0.0110972;5.28227;0.997635;10;ACTGCTAACG;GCCACTTCCGG;-!FOXF2#MA0030.1;0;0.0134733;6.41327;0.997635;10;ACTGCTAACG;ATTGTTTACGTTTG;-!CST6#MA0286.1;-5;0.0145351;6.91873;0.997635;5;ACTGCTAACG;TTACGTCAT;-!RGT1#MA0367.1;0;0.0155274;7.39103;0.997635;10;ACTGCTAACG;AATTTTTCCGG;+!HLF#MA0043.1;-3;0.01731;8.23956;0.997635;7;ACTGCTAACG;GGTTACGCAATT;+!MIZF#MA0131.1;-5;0.0186144;8.86043;0.997635;5;ACTGCTAACG;TAACGTCCGC;+!CEP3#MA0282.1;-4;0.0189928;9.04059;0.997635;6;ACTGCTAACG;TTTCCGAG;-!CREB1#MA0018.1;0;0.019651;9.35389;0.997635;10;ACTGCTAACG;CCTGGTGACGTC;+!UPC2#MA0411.1;-4;0.0197299;9.39141;0.997635;6;ACTGCTAACG;TATACGA;+
}}
}}

Latest revision as of 14:19, 7 September 2012

Full Name: 16-RBYKBTWACG,CNhs11998,BestGuess:E4F1_f1_HM09(0.704946787356956),T:366.0(9.77%),B:2267.0(5.23%),P:1e-28

Motif matrix
POACGT
1139.81256.364114.19255.632
20.366141.27698.454126.27
391.134122.9760.366151.524
423.42441.724154.086146.766
50.366131.76115.656117.852
60.3660.3660.366364.902
7179.70630.37823.424132.492
8207.52289.3040.36668.808
90.366364.9020.3660.366
100.3660.366364.9020.366

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
YAP6#MA0418.104.39302e-050.02091080.041722710ACTGCTAACGGTCGCTTACGTAATCAGACC-
ABF1#MA0265.150.0001936180.0921620.09194410ACTGCTAACGATATCACTTTATACGA-
YAP1#MA0415.110.00063280.3012130.20033410ACTGCTAACGATTTGCTTACGTAAGCTCGT+
id1#MA0120.120.001494690.7114710.23659610ACTGCTAACGTTTTCCTTTTCG+
LEU3#MA0324.1-10.002857171.360010.3876569ACTGCTAACGCCGGTAACGG-
GABPA#MA0062.200.01109725.282270.99763510ACTGCTAACGGCCACTTCCGG-
FOXF2#MA0030.100.01347336.413270.99763510ACTGCTAACGATTGTTTACGTTTG-
CST6#MA0286.1-50.01453516.918730.9976355ACTGCTAACGTTACGTCAT-
RGT1#MA0367.100.01552747.391030.99763510ACTGCTAACGAATTTTTCCGG+
HLF#MA0043.1-30.017318.239560.9976357ACTGCTAACGGGTTACGCAATT+
MIZF#MA0131.1-50.01861448.860430.9976355ACTGCTAACGTAACGTCCGC+
CEP3#MA0282.1-40.01899289.040590.9976356ACTGCTAACGTTTCCGAG-
CREB1#MA0018.100.0196519.353890.99763510ACTGCTAACGCCTGGTGACGTC+
UPC2#MA0411.1-40.01972999.391410.9976356ACTGCTAACGTATACGA+
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