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MacroAPE 1083:6-TCGGCTG: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;19.096;1.736;1.736;1713.432!2;22.568;1319.36;1.736;392.336!3;22.568;1.736;1381.856;329.84!4;1.736;1.736;1730.792;1.736!5;1.736;1730.792;1.73...")
 
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350374!10429-106D6;0.549636!10464-106H5;0.777599!10827-111C8;0.563409!10789-110H6;0.0857563!10828-111C9;0.12487!10788-110H5;0.283573!10792-110H9;0.240287!10765-110E9;0.139632!10829-111D1;0.277937!10830-111D2;0.21363!10831-111D3;0.181267!10832-111D4;0.506072!10833-111D5;0.218075!10764-110E8;0.172897!10770-110F5;0.203795!10399-106A3;0.123646!10400-106A4;0.200245!10405-106A9;0.23029!10834-111D6;0.239839!10835-111D7;0.145022!10836-111D8;0.688378!10837-111D9;0.802532!10699-109G6;0.538475!10802-111A1;0.308623!10796-110I4;0.541866!10010-101C1;0.822098!10810-111A9;0.669482!10421-106C7;0.715399!10708-109H6;0.631507!12235-129G3;0.80965!12236-129G4;0.520704!12237-129G5;0.563461!10167-103B5;0.116987!10151-102I7;0.117029!10428-106D5;0.109844!10795-110I3;0.680252!10805-111A4;0.0966275!10052-101G7;0.0767377!10189-103D9;0.587053!10589-108D4;0.862368!10425-106D2;0.597171!10427-106D4;0.00131506!10702-109G9;0.624418!10432-106D9;0.391347!10496-107C1;0.737981!10718-109I7;0.636077!10011-101C2;0.275322!10053-101G8;0.650796!10686-109F2;0.0123011!10084-102B3;0.979995!10012-101C3;0.100857!10085-102B4;0.113874!10482-107A5;0.0499391!10419-106C5;0.880076!10080-102A8;0.518475!10760-110E4;0.645798!10709-109H7;0.426396!10710-109H8;0.820287!10703-109H1;0.584941!10719-109I8;0.0208773!10642-109A3;0.0488293!10177-103C6;0.000468698!10164-103B2;0.166018!10173-103C2;0.132791!10166-103B4;0.0473967!10083-102B2;0.0465408!10188-103D8;0.0704848!10552-107I3;0.130234!10553-107I4;0.325287!10013-101C4;0.235395!10536-107G5;0.574986!10618-108G6;0.836623!10423-106C9;0.323072!10785-110H2;0.466276!12238-129G6;0.940511!12239-129G7;0.650192!12240-129G8;0.214689!10416-106C2;0.356597!10801-110I9;0.224603!10766-110F1;0.352514!10824-111C5;0.124832!10825-111C6;0.67624!10826-111C7;0.709201!10454-106G4;0.733994!10409-106B4;0.519379!10638-108I8;0.607809!10636-108I6;0.943734!10513-107D9;0.321412!10420-106C6;0.573749!10082-102B1;0.16696!10014-101C5;0.405892!10070-101I7;0.414126!10452-106G2;0.473361!10453-106G3;0.486873!10449-106F8;0.59386!10042-101F6;0.614641!10069-101I6;0.154293!10193-103E4;0.533505!10631-108I1;0.0782836!10438-106E6;0.597974!10488-107B2;0.243275!10196-103E7;0.387522!10071-101I8;0.198966!10071-101I8;0.246531!10041-101F5;0.0435221!10451-106G1;0.834164!10450-106F9;0.510173!10604-108F1;0.356992!10605-108F2;0.478881!10606-108F3;0.284295!10603-108E9;0.408761!10497-107C2;0.331458!10448-106F7;0.801682!10643-109A4;0.730205!10426-106D3;0.947103!10431-106D8;0.387692!10197-103E8;0.967504!10443-106F2;0.686377!10815-111B5;0.91979!10816-111B6;0.787954!10817-111B7;0.809431!10015-101C6;0.677121!10410-106B5;0.857083!10054-101G9;0.489737!10758-110E2;0.325256!10711-109H9;0.547546!10040-101F4;0.990016!10470-106I2;0.0820191!10415-106C1;0.857099!10198-103E9;0.67778!10614-108G2;0.528651!10612-108F9;0.645356!10549-107H9;0.658977!10615-108G3;0.299118!10487-107B1;0.119304!10433-106E1;0.22754!10688-109F4;0.417156!10444-106F3;0.110122!10444-106F3;0.277278!10485-107A8;0.309682!10413-106B8;0.372555!10175-103C4;0.130675!10161-103A8;0.11896!12131-128D7;0.129216!10624-108H3;0.341236!10712-109I1;0.190978!10205-103F7;0.74755!10206-103F8;0.361106!10207-103F9;0.258753!10050-101G5;0.752347!10051-101G6;0.366446!10016-101C7;0.594608!10046-101G1;0.654514!10778-110G4;0.254671!10633-108I3;0.590525!10818-111B8;0.0363402!10819-111B9;0.903538!10820-111C1;0.883439!10484-107A7;0.935877!10808-111A7;0.526063!10169-103B7;0.685319!10153-102I9;0.125162!13425-144D5;0.140028!13433-144E4;0.00263217!13437-144E8;0.00405299!11904-125F5;0.00664092!11905-125F6;0.142182!10039-101F3;0.189136!10791-110H8;0.0939273!10017-101C8;0.750779!10045-101F9;0.646942!10509-107D5;0.370018!10839-111E2;0.318045!10692-109F8;0.403947!10079-102A7;0.86268!10078-102A6;0.354579!10721-110A1;0.790862!10569-108B2;0.373756!10570-108B3;0.391984!10571-108B4;0.185098!10647-109A8;0.512958!10752-110D5;0.239762!10782-110G8;0.398142!10726-110A6;0.573344!10018-101C9;0.905276!10086-102B5;0.398158!10182-103D2;0.717088!10165-103B3;0.11629!10499-107C4;0.120173!10408-106B3;0.940971!10019-101D1;0.293136!10068-101I5;0.958224!10075-102A3;0.921067!10077-102A5;0.918648!10727-110A7;0.378171!10775-110G1;0.323613!10412-106B7;0.234025!12231-129F8;0.783793!12232-129F9;0.288158!12233-129G1;0.227334!12234-129G2;0.350831!10414-106B9;0.388165!10170-103B8;0.191614!10183-103D3;0.0932202!10150-102I6;0.100126!10174-103C3;0.0992713!10155-103A2;0.254446!10038-101F2;0.131206!10838-111E1;0.14211!10759-110E3;0.0834506!10514-107E1;0.475005!10465-106H6;0.344207!10691-109F7;0.387079!10843-111E6;0.0258707!10844-111E7;0.0134778!11747-123G1;0.0069325!11748-123G2;0.157237!11749-123G3;0.551205!11750-123G4;0.115745!11751-123G5;0.528609!11840-124H4;0.694185!11752-123G6;0.345917!11753-123G7;0.244643!11754-123G8;0.815593!11755-123G9;0.486839!11756-123H1;0.658927!11833-124G6;0.450284!11760-123H5;0.569796!11836-124G9;0.638242!11758-123H3;0.345201!11835-124G8;0.254071!11762-123H7;0.328612!11838-124H2;0.149096!11757-123H2;0.590298!11759-123H4;0.52114!11761-123H6;0.249563!11842-124H6;0.729873!11837-124H1;0.790095!10568-108B1;0.251246!13230-141I8;0.842401!13231-141I9;0.986774!10696-109G3;0.997189!10493-107B7;0.481216!10494-107B8;0.740825!10850-111F4;0.468093!10851-111F5;0.871789!10852-111F6;0.595938!10853-111F7;0.47713!10854-111F8;0.556853!10855-111F9;0.971128!10856-111G1;0.48691!10847-111F1;0.957617!10846-111E9;0.888474!10848-111F2;0.988446!10845-111E8;0.988325!10857-111G2;0.489995!10858-111G3;0.596226!10156-103A3;0.722848!11901-125F2;0.0952975!11902-125F3;0.64155!11903-125F4;0.523554!10689-109F5;0.192259!10648-109A9;0.910035!10784-110H1;0.659169!10744-110C6;0.370641!10772-110F7;0.551399!10474-106I6;0.417398!10600-108E6;0.652591!10684-109E9;0.536526!12226-129F3;0.851464!12227-129F4;0.370045!10508-107D4;0.379952!10539-107G8;0.0231964!10607-108F4;0.00219707!10555-107I6;0.123169!10774-110F9;0.00246728!10637-108I7;0.803487!10663-109C6;0.277463!10728-110A8;0.289191!10729-110A9;0.873016!10430-106D7;0.472949!10730-110B1;0.950022!10813-111B3;0.258166!10812-111B2;0.548992!10037-101F1;0.495343!10172-103C1;0.100955!10163-103B1;0.125872!10076-102A4;0.110791!10073-102A1;0.0993304!10036-101E9;0.016623!10195-103E6;0.0883783!10277-104E7;0.113059!10434-106E2;0.0713623!10550-107I1;0.860534!10545-107H5;0.820552!10544-107H4;0.833813!10704-109H2;0.181869!10510-107D6;0.822747!10558-107I9;0.98258!10020-101D2;0.323335!10732-110B3;0.91986!10049-101G4;0.746349!10698-109G5;0.943835!10437-106E5;0.711928!10417-106C3;0.854236!10035-101E8;0.329259!10171-103B9;0.0871537!10157-103A4;0.0650713!10034-101E7;0.112303!10072-101I9;0.0890963!10199-103F1;0.0210271!10200-103F2;0.561905!10697-109G4;0.565262!10723-110A3;0.981998!10179-103C8;0.78811!10160-103A7;0.0469993!10180-103C9;0.040308!10162-103A9;0.381514!10021-101D3;0.208681!10840-111E3;0.812858!10706-109H4;0.821174!10033-101E6;0.754278!10032-101E5;0.0785023!10490-107B4;0.0946718!10439-106E7;0.97611!10022-101D4;0.843847!10176-103C5;0.455243!10469-106I1;0.0925804!10067-101I4;0.922655!10411-106B6;0.213211!10471-106I3;0.402799!10030-101E3;0.211785!10475-106I7;0.214563!10787-110H4;0.200184!10477-106I9;0.925304!10695-109G2;0.100861!11771-123I7;0.713936!11772-123I8;0.482277!11773-123I9;0.274313!10093-102C3;0.77096!10442-106F1;0.62127!10442-106F1;0.625932!10201-103F3;0.81217!10639-108I9;0.430382!11843-124H7;0.827914!11841-124H5;0.994069!10693-109F9;0.930918!10436-106E4;0.346316!10483-107A6;0.551279!10282-104F3;0.820723!10023-101D5;0.907884!10066-101I3;0.773701!10065-101I2;0.407224!10800-110I8;0.274981!10610-108F7;0.135332!10841-111E4;0.00409304!10541-107H1;0.484655!10842-111E5;0.0598098!10562-108A4;0.0472304!10024-101D6;0.0877927!10064-101I1;0.174011!10609-108F6;0.172995!10048-101G3;0.170436!10781-110G7;0.464815!10181-103D1;0.0359928!10159-103A6;0.13369!10056-101H2;0.133547!10737-110B8;0.103715!10025-101D7;0.636534!10044-101F8;0.466476!10424-106D1;0.746644!10463-106H4;0.668871!10616-108G4;0.804594!10486-107A9;0.480941!10062-101H8;0.843603!10202-103F4;0.447666!10158-103A5;0.595279!10441-106E9;0.158636!10031-101E4;0.142282!10063-101H9;0.097021!10063-101H9;0.027117!11763-123H8;0.268058!11765-123I1;0.909324!11768-123I4;0.313749!10807-111A6;0.637564!10790-110H7;0.00601661!10798-110I6;0.027387!10786-110H3;0.0259321!10591-108D6;0.0212399!10593-108D8;0.17181!10590-108D5;0.0366589!10026-101D8;0.341323!10096-102C6;0.494434!10168-103B6;0.0538328!10154-103A1;0.127904!10209-103G2;0.130729!10061-101H7;0.820028!10027-101D9;0.382399!10043-101F7;0.914206!10783-110G9;0.617998!10028-101E1;0.703348!10060-101H6;0.760456!10203-103F5;0.358038!10059-101H5;0.634945!10047-101G2;0.599946!10029-101E2;0.874329!10058-101H4;0.893925!10418-106C4;0.443524!10492-107B6;0.357798!10694-109G1;0.430911!10797-110I5;0.971346!10057-101H3;0.0149303!10100-102D1;0.457184!10055-101H1;0.673787!10204-103F6;0.28612!10191-103E2;0.637312!10563-108A5;0.683248
|name=6-TCGGCTG,CNhs10636,BestGuess:NFIA+NFIB+NFIC+NFIX_si_HM09(0.67378501000454),T:1736.0(58.59%),B:22138.3(48.55%),P:1e-27
|name=6-TCGGCTG,CNhs10636,BestGuess:NFIA+NFIB+NFIC+NFIX_si_HM09(0.67378501000454),T:1736.0(58.59%),B:22138.3(48.55%),P:1e-27
|tomtom_result=YLL054C#MA0429.1;0;0.00155884;0.742006;0.792955;7;TCGGCTG;TCGGCCG;-!IME1#MA0320.1;1;0.00194383;0.925265;0.792955;7;TCGGCTG;CTCGGCGG;-!CUP2#MA0287.1;4;0.00249881;1.18943;0.792955;7;TCGGCTG;CATTTCTGCTG;-!RDS1#MA0361.1;0;0.00464966;2.21324;1;7;TCGGCTG;CCGGCCG;-!UME6#MA0412.1;0;0.00641402;3.05308;1;7;TCGGCTG;TCGGCGGCTAATT;+!NFYA#MA0060.1;7;0.0153463;7.30483;1;7;TCGGCTG;GCGCTGATTGGCTGAG;-!STP1#MA0394.1;1;0.0162337;7.72723;1;7;TCGGCTG;TGCGGCGC;+!Gamyb#MA0034.1;1;0.0186071;8.85699;1;7;TCGGCTG;GGCGGTTGTC;-!NFIC#MA0161.1;0;0.0209253;9.96042;1;6;TCGGCTG;TTGGCA;+
}}
}}

Latest revision as of 14:38, 7 September 2012

Full Name: 6-TCGGCTG,CNhs10636,BestGuess:NFIA+NFIB+NFIC+NFIX_si_HM09(0.67378501000454),T:1736.0(58.59%),B:22138.3(48.55%),P:1e-27

Motif matrix
POACGT
119.0961.7361.7361713.432
222.5681319.361.736392.336
322.5681.7361381.856329.84
41.7361.7361730.7921.736
51.7361730.7921.7361.736
61.7361.7361.7361730.792
760.76354.1441319.361.736

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
YLL054C#MA0429.100.001558840.7420060.7929557TCGGCTGTCGGCCG-
IME1#MA0320.110.001943830.9252650.7929557TCGGCTGCTCGGCGG-
CUP2#MA0287.140.002498811.189430.7929557TCGGCTGCATTTCTGCTG-
RDS1#MA0361.100.004649662.2132417TCGGCTGCCGGCCG-
UME6#MA0412.100.006414023.0530817TCGGCTGTCGGCGGCTAATT+
NFYA#MA0060.170.01534637.3048317TCGGCTGGCGCTGATTGGCTGAG-
STP1#MA0394.110.01623377.7272317TCGGCTGTGCGGCGC+
Gamyb#MA0034.110.01860718.8569917TCGGCTGGGCGGTTGTC-
NFIC#MA0161.100.02092539.9604216TCGGCTGTTGGCA+
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