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MacroAPE 1083:12-TGWCACGGCG: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;0.829;0.829;31.502;795.84!2;144.246;106.941;465.898;111.915!3;420.303;24.87;0.829;382.998!4;5.803;640.817;0.829;181.551!5;673.148;30.673;111...")
 
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3;0.324271!10429-106D6;0.507688!10464-106H5;0.793075!10827-111C8;0.626546!10789-110H6;0.377449!10828-111C9;0.521618!10788-110H5;0.681012!10792-110H9;0.173097!10765-110E9;0.520603!10829-111D1;0.855569!10830-111D2;0.814988!10831-111D3;0.800355!10832-111D4;0.201471!10833-111D5;0.711667!10764-110E8;0.45845!10770-110F5;0.356996!10399-106A3;0.971704!10400-106A4;0.871501!10405-106A9;0.956468!10834-111D6;0.527755!10835-111D7;0.468963!10836-111D8;0.799176!10837-111D9;0.3847!10699-109G6;0.918061!10802-111A1;0.955679!10796-110I4;0.397374!10010-101C1;0.269547!10810-111A9;0.543728!10421-106C7;0.569465!10708-109H6;0.226711!12235-129G3;0.718898!12236-129G4;0.046085!12237-129G5;0.524696!10167-103B5;0.0215551!10151-102I7;0.20671!10428-106D5;0.352767!10795-110I3;0.816838!10805-111A4;0.318153!10052-101G7;0.387117!10189-103D9;0.453671!10589-108D4;0.976434!10425-106D2;0.272694!10427-106D4;0.975449!10702-109G9;0.714501!10432-106D9;0.756152!10496-107C1;0.32311!10718-109I7;0.90502!10011-101C2;0.174461!10053-101G8;0.490575!10686-109F2;0.706214!10084-102B3;0.996188!10012-101C3;0.345749!10085-102B4;0.441744!10482-107A5;0.468652!10419-106C5;0.380988!10080-102A8;0.179164!10760-110E4;0.360285!10709-109H7;0.530209!10710-109H8;0.782035!10703-109H1;0.806912!10719-109I8;0.333458!10642-109A3;0.166445!10177-103C6;0.332785!10164-103B2;0.190647!10173-103C2;0.16709!10166-103B4;0.186461!10083-102B2;0.205956!10188-103D8;0.382719!10552-107I3;0.38135!10553-107I4;0.701928!10013-101C4;0.350307!10536-107G5;0.339974!10618-108G6;0.686909!10423-106C9;0.971425!10785-110H2;0.981465!12238-129G6;0.55011!12239-129G7;0.177387!12240-129G8;0.316886!10416-106C2;0.218248!10801-110I9;0.177434!10766-110F1;0.223057!10824-111C5;0.665234!10825-111C6;0.633729!10826-111C7;0.721571!10454-106G4;0.747233!10409-106B4;0.969141!10638-108I8;0.535877!10636-108I6;0.526815!10513-107D9;0.867801!10420-106C6;0.721906!10082-102B1;0.38569!10014-101C5;0.795692!10070-101I7;0.998914!10452-106G2;0.8406!10453-106G3;0.582996!10449-106F8;0.883066!10042-101F6;0.859851!10069-101I6;0.348966!10193-103E4;0.838669!10631-108I1;0.381281!10438-106E6;0.425589!10488-107B2;0.0937276!10196-103E7;0.798919!10071-101I8;0.266918!10071-101I8;0.924782!10041-101F5;0.396313!10451-106G1;0.362134!10450-106F9;0.722429!10604-108F1;0.480727!10605-108F2;0.609971!10606-108F3;0.721747!10603-108E9;0.64997!10497-107C2;0.744455!10448-106F7;0.222461!10643-109A4;0.865681!10426-106D3;0.782082!10431-106D8;0.937918!10197-103E8;0.829167!10443-106F2;0.575736!10815-111B5;0.967684!10816-111B6;0.688992!10817-111B7;0.991597!10015-101C6;0.801826!10410-106B5;0.716961!10054-101G9;0.604244!10758-110E2;0.71226!10711-109H9;0.145899!10040-101F4;0.563681!10470-106I2;0.291168!10415-106C1;0.551502!10198-103E9;0.490259!10614-108G2;0.701229!10612-108F9;0.978311!10549-107H9;0.813451!10615-108G3;0.385291!10487-107B1;0.0600922!10433-106E1;0.900478!10688-109F4;0.896481!10444-106F3;0.062191!10444-106F3;0.30762!10485-107A8;0.328064!10413-106B8;0.441786!10175-103C4;0.710491!10161-103A8;0.300683!12131-128D7;0.265337!10624-108H3;0.10523!10712-109I1;0.672856!10205-103F7;0.353346!10206-103F8;0.717403!10207-103F9;0.94511!10050-101G5;0.847216!10051-101G6;0.887665!10016-101C7;0.877006!10046-101G1;0.792039!10778-110G4;0.99177!10633-108I3;0.902989!10818-111B8;0.995335!10819-111B9;0.636278!10820-111C1;0.718543!10484-107A7;0.697912!10808-111A7;0.0933569!10169-103B7;0.424762!10153-102I9;0.493469!13425-144D5;0.463025!13433-144E4;0.236438!13437-144E8;0.209401!11904-125F5;0.166564!11905-125F6;0.00996988!10039-101F3;0.00620342!10791-110H8;0.290895!10017-101C8;0.815922!10045-101F9;0.936174!10509-107D5;0.774315!10839-111E2;0.823925!10692-109F8;0.160222!10079-102A7;0.918717!10078-102A6;0.998845!10721-110A1;0.402494!10569-108B2;0.641967!10570-108B3;0.615848!10571-108B4;0.463155!10647-109A8;0.373338!10752-110D5;0.486867!10782-110G8;0.717529!10726-110A6;0.939797!10018-101C9;0.451797!10086-102B5;0.368173!10182-103D2;0.676396!10165-103B3;0.445081!10499-107C4;0.41504!10408-106B3;0.556006!10019-101D1;0.329992!10068-101I5;0.52979!10075-102A3;0.290017!10077-102A5;0.374979!10727-110A7;0.957481!10775-110G1;0.471796!10412-106B7;0.58123!12231-129F8;0.486949!12232-129F9;0.0152253!12233-129G1;0.0538615!12234-129G2;0.0354344!10414-106B9;0.0210804!10170-103B8;0.381164!10183-103D3;0.222073!10150-102I6;0.311719!10174-103C3;0.320273!10155-103A2;0.390204!10038-101F2;0.382642!10838-111E1;0.474887!10759-110E3;0.751474!10514-107E1;0.155531!10465-106H6;0.923276!10691-109F7;0.55188!10843-111E6;0.00493707!10844-111E7;0.370504!11747-123G1;0.441405!11748-123G2;0.294057!11749-123G3;0.536838!11750-123G4;0.451468!11751-123G5;0.349645!11840-124H4;0.792417!11752-123G6;0.541653!11753-123G7;0.814785!11754-123G8;0.552319!11755-123G9;0.835421!11756-123H1;0.558005!11833-124G6;0.278978!11760-123H5;0.998872!11836-124G9;0.173881!11758-123H3;0.388538!11835-124G8;0.287278!11762-123H7;0.903836!11838-124H2;0.265885!11757-123H2;0.518376!11759-123H4;0.18476!11761-123H6;0.812226!11842-124H6;0.682754!11837-124H1;0.620507!10568-108B1;0.503464!13230-141I8;0.092036!13231-141I9;0.747498!10696-109G3;0.832548!10493-107B7;0.846061!10494-107B8;0.603854!10850-111F4;0.673293!10851-111F5;0.172347!10852-111F6;0.608055!10853-111F7;0.106396!10854-111F8;0.0998224!10855-111F9;0.293421!10856-111G1;0.0769301!10847-111F1;0.598743!10846-111E9;0.523428!10848-111F2;0.171182!10845-111E8;0.208444!10857-111G2;0.207406!10858-111G3;0.95891!10156-103A3;0.381646!11901-125F2;0.274716!11902-125F3;0.868311!11903-125F4;0.563344!10689-109F5;0.84593!10648-109A9;0.788181!10784-110H1;0.21645!10744-110C6;0.990535!10772-110F7;0.210633!10474-106I6;0.533641!10600-108E6;0.262708!10684-109E9;0.342016!12226-129F3;0.894868!12227-129F4;0.540544!10508-107D4;0.452558!10539-107G8;0.364592!10607-108F4;0.360812!10555-107I6;0.344057!10774-110F9;0.945424!10637-108I7;0.780158!10663-109C6;0.806161!10728-110A8;0.393064!10729-110A9;0.834712!10430-106D7;0.838047!10730-110B1;0.9545!10813-111B3;0.539301!10812-111B2;0.380673!10037-101F1;0.644997!10172-103C1;0.279945!10163-103B1;0.192121!10076-102A4;0.289215!10073-102A1;0.318832!10036-101E9;0.279388!10195-103E6;0.330523!10277-104E7;0.417219!10434-106E2;0.320302!10550-107I1;0.818465!10545-107H5;0.421376!10544-107H4;0.980258!10704-109H2;0.504793!10510-107D6;0.433535!10558-107I9;0.924621!10020-101D2;0.18186!10732-110B3;0.220892!10049-101G4;0.122746!10698-109G5;0.801926!10437-106E5;0.840759!10417-106C3;0.373603!10035-101E8;0.899913!10171-103B9;0.346699!10157-103A4;0.255043!10034-101E7;0.304204!10072-101I9;0.306845!10199-103F1;0.239877!10200-103F2;0.466945!10697-109G4;0.697288!10723-110A3;0.633631!10179-103C8;0.595208!10160-103A7;0.0877031!10180-103C9;0.16248!10162-103A9;0.00109259!10021-101D3;0.00334575!10840-111E3;0.237177!10706-109H4;0.545741!10033-101E6;0.841424!10032-101E5;0.390942!10490-107B4;0.360738!10439-106E7;0.677484!10022-101D4;0.5177!10176-103C5;0.307398!10469-106I1;0.169101!10067-101I4;0.258442!10411-106B6;0.845751!10471-106I3;0.218932!10030-101E3;0.995333!10475-106I7;0.514092!10787-110H4;0.815626!10477-106I9;0.517493!10695-109G2;0.267303!11771-123I7;0.552147!11772-123I8;0.291122!11773-123I9;0.719612!10093-102C3;0.628092!10442-106F1;0.335989!10442-106F1;0.335068!10201-103F3;0.264738!10639-108I9;0.183627!11843-124H7;0.775216!11841-124H5;0.943522!10693-109F9;0.345242!10436-106E4;0.604586!10483-107A6;0.905823!10282-104F3;0.0653338!10023-101D5;0.480857!10066-101I3;0.58731!10065-101I2;0.693981!10800-110I8;0.910556!10610-108F7;0.0514557!10841-111E4;0.149037!10541-107H1;0.08612!10842-111E5;0.719027!10562-108A4;0.81014!10024-101D6;0.0519064!10064-101I1;0.883155!10609-108F6;0.409334!10048-101G3;0.0502226!10781-110G7;0.381547!10181-103D1;0.0210525!10159-103A6;0.443383!10056-101H2;0.32173!10737-110B8;0.608891!10025-101D7;0.444126!10044-101F8;0.9632!10424-106D1;0.737559!10463-106H4;0.896876!10616-108G4;0.95534!10486-107A9;0.710663!10062-101H8;0.968335!10202-103F4;0.872012!10158-103A5;0.750693!10441-106E9;0.257241!10031-101E4;0.432419!10063-101H9;0.397621!10063-101H9;0.268707!11763-123H8;0.762773!11765-123I1;0.40222!11768-123I4;0.642964!10807-111A6;0.702527!10790-110H7;0.357902!10798-110I6;0.719354!10786-110H3;0.268828!10591-108D6;0.819017!10593-108D8;0.949871!10590-108D5;0.776463!10026-101D8;0.313671!10096-102C6;0.233003!10168-103B6;0.269723!10154-103A1;0.321543!10209-103G2;0.206935!10061-101H7;0.71132!10027-101D9;0.972993!10043-101F7;0.659802!10783-110G9;0.921073!10028-101E1;0.0491882!10060-101H6;0.457921!10203-103F5;0.263868!10059-101H5;0.808572!10047-101G2;0.617358!10029-101E2;0.939265!10058-101H4;0.376489!10418-106C4;0.725702!10492-107B6;0.761958!10694-109G1;0.838155!10797-110I5;0.422716!10057-101H3;0.781141!10100-102D1;0.71113!10055-101H1;0.27006!10204-103F6;0.749923!10191-103E2;0.520399!10563-108A5;0.9219
|name=12-TGWCACGGCG,CNhs12575,BestGuess:TGIF1_si_HM09(0.644167299035481),T:829.0(18.90%),B:5522.3(12.44%),P:1e-33
|name=12-TGWCACGGCG,CNhs12575,BestGuess:TGIF1_si_HM09(0.644167299035481),T:829.0(18.90%),B:5522.3(12.44%),P:1e-33
|tomtom_result=Pax2#MA0067.1;0;0.000650091;0.309443;0.618887;8;TGACACGGCG;AGTCACGG;+!STP2#MA0395.1;3;0.0031451;1.49707;1;10;TGACACGGCG;TCGTCGTGCGGCGCCGATCA;-!INSM1#MA0155.1;0;0.00512728;2.44058;1;10;TGACACGGCG;TGTCAGGGGGCG;+!STP1#MA0394.1;-3;0.00584487;2.78216;1;7;TGACACGGCG;TGCGGCGC;+!NFE2L2#MA0150.1;1;0.00708477;3.37235;1;10;TGACACGGCG;ATGACTCAGCA;+!ESR1#MA0112.1;2;0.00942041;4.48412;1;10;TGACACGGCG;GGGGTCACGGTGACCTGG;-!SUT1#MA0399.1;-3;0.0122942;5.85204;1;7;TGACACGGCG;CGCGGGG;+!ESR2#MA0258.1;3;0.0132287;6.29687;1;10;TGACACGGCG;CAAGGTCACGGTGACCTG;+!TLX1::NFIC#MA0119.1;1;0.0167726;7.98376;1;10;TGACACGGCG;TTGGCATGGTGCCA;-!vis#MA0252.1;0;0.0171442;8.16066;1;6;TGACACGGCG;TGACAG;+!YGR067C#MA0425.1;0;0.0186064;8.85666;1;10;TGACACGGCG;TGAAAAAGTGGGGT;-
}}
}}

Latest revision as of 14:40, 7 September 2012

Full Name: 12-TGWCACGGCG,CNhs12575,BestGuess:TGIF1_si_HM09(0.644167299035481),T:829.0(18.90%),B:5522.3(12.44%),P:1e-33

Motif matrix
POACGT
10.8290.82931.502795.84
2144.246106.941465.898111.915
3420.30324.870.829382.998
45.803640.8170.829181.551
5673.14830.673111.08614.093
6132.64387.143143.417165.8
70.82910.777678.951138.443
80.82943.108784.2340.829
953.056497.4114.402164.142
10156.6810.829488.281183.209

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Pax2#MA0067.100.0006500910.3094430.6188878TGACACGGCGAGTCACGG+
STP2#MA0395.130.00314511.49707110TGACACGGCGTCGTCGTGCGGCGCCGATCA-
INSM1#MA0155.100.005127282.44058110TGACACGGCGTGTCAGGGGGCG+
STP1#MA0394.1-30.005844872.7821617TGACACGGCGTGCGGCGC+
NFE2L2#MA0150.110.007084773.37235110TGACACGGCGATGACTCAGCA+
ESR1#MA0112.120.009420414.48412110TGACACGGCGGGGGTCACGGTGACCTGG-
SUT1#MA0399.1-30.01229425.8520417TGACACGGCGCGCGGGG+
ESR2#MA0258.130.01322876.29687110TGACACGGCGCAAGGTCACGGTGACCTG+
TLX1::NFIC#MA0119.110.01677267.98376110TGACACGGCGTTGGCATGGTGCCA-
vis#MA0252.100.01714428.1606616TGACACGGCGTGACAG+
YGR067C#MA0425.100.01860648.85666110TGACACGGCGTGAAAAAGTGGGGT-
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