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MCL coexpression mm9:159: Difference between revisions

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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
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|coexpression_dpi_cluster_scores_median=0.064513712786576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179051645532617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.675940999735182,0.760491754914107,0.681511539650463,0,0,0,0,0,0,0,0.150221463778622,0.147681830935052,0.122898517376903,0.877008478396901,0.842824499331024,0.276481849788278,0.282864857432175,0.28312448614836,0.877784039392966,0.794849055410241,0.844517856919114,0.73324286993079,0.724218554124095,0.651538698462017,0.779978241563323,0.858395864009762,0.845633272713636,0.898856889284108,0.821074351777541,0.724833668352426,0,0,0,0,0,0,0,0,0.0301583286619172,0,0,0,0.0626722748382988,0,0,0,0,0,0,0.00292210879839535,0,0.0568749727366705,0.0694776635602275,0.111584068254384,0.0423154657708865,0.06097065795378,0.0917293418104957,0,0,0,0,0,0,0,0,0.237886831843786,0.268647776772344,0,0,0,0,0.815299137565835,0.469607032052358,0.469376130431555,0.438288824846147,0.436437301610595,0.784105470891499,0.662553775625478,0,0,0,0.0829439327499637,0.0540832088517389,0.0997998355226637,0.134906098324995,0.162886375277492,0.207453528713667,0.179682427843873,0.193739510044836,0.181102009199648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.408781082094384,0.335122014717603,0,0,0,0.021584016565783,0.0526332442203703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782244067430569,0.764968517387691,0,0,0.104130841177619,0,0.0847275925579778,0,0,0,0,0.10753161633046,0.010686784090611,0.466560377831798,0,0.00595453829624705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127508051874503,0.0719044921483595,0.142413261346553,0.0843392403965415,0.101297763209344,0.186138497248578,0.219635884762414,0.280157689426283,0,0,0,0,0,0,0,0,0,0.697733289957992,0,0,0,0,0,0,0,0,0,0,0.0637715600712905,0.0499201424910975,0.0441832952821187,0.0142200454582979,0,0.00356875530830709,0.0279421632588873,0,0,0,0,0,0,0.0446994780424601,0.00750586070323995,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.406380466917586,0.376754964798171,0.331587424856164,0.35904152682956,0.374778587894724,0.399810008829701,0.347733015792894,0.355426251657825,0.372806586713801,0.407098602473158,0.081914003768173,0.15091263877167,0.179609468438842,0.17208118264908,0.211878289366281,0.190760324464606,0.168571332836902,0.209006745960922,0.215330413983256,0.17765030293269,0.245620709720879,0.194758206527804,0.193639056320997,0.223225275270844,0.191064405934859,0.169172763866184,0.194871354222781,0.183587767881725,0.14986111676545,0.201068050435521,0.128033729919821,0.185379913858661,0.169342968499384,0.199037798091534,0.232418784975152,0.224511532029221,0.156791318503149,0.151241448900246,0.199132253957242,0.193442483447008,0.201382397922935,0.203085505727974,0.171559908186711,0.165781451382873,0.169417641246843,0.329015238880389,0.230907198759394,0.155257708002722,0.140689222355642,0.0865703124974023,0.0905641158318875
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
}}
}}

Revision as of 12:37, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:3557824..3557841,-p2@Oprm1
Mm9::chr10:79602092..79602115,-p1@Dos
Mm9::chr11:100217392..100217410,-p1@Hap1
Mm9::chr11:100217415..100217422,-p3@Hap1
Mm9::chr11:105881429..105881481,+p@chr11:105881429..105881481
+
Mm9::chr11:33743526..33743629,-p1@Kcnip1
Mm9::chr11:46048962..46048973,+p1@C030019I05Rik
Mm9::chr11:68760875..68760914,-p3@Arhgef15
Mm9::chr11:82201059..82201070,+p@chr11:82201059..82201070
+
Mm9::chr12:106575018..106575047,+p2@ENSMUST00000138649
p2@uc007oyg.1
Mm9::chr12:106575370..106575380,+p3@uc007oyh.1
Mm9::chr12:106575405..106575435,+p1@uc007oyh.1
Mm9::chr12:109843967..109844024,+p5@Evl
Mm9::chr12:82434116..82434207,-p1@Slc8a3
Mm9::chr13:111071094..111071114,-p5@Rab3c
Mm9::chr13:14615293..14615304,-p3@Hecw1
Mm9::chr14:76903992..76904056,+p6@Tsc22d1
Mm9::chr14:96918286..96918321,-p1@Klhl1
Mm9::chr16:20621503..20621520,-p4@Camk2n2
Mm9::chr17:24625528..24625611,+p1@Caskin1
Mm9::chr17:47825908..47825919,+p7@Frs3
Mm9::chr17:47825941..47825956,+p5@Frs3
Mm9::chr17:8533892..8533912,+p@chr17:8533892..8533912
+
Mm9::chr17:93598688..93598748,+p2@Adcyap1
Mm9::chr18:37460464..37460489,+p1@Pcdhb3
Mm9::chr18:86881030..86881042,+p3@Cbln2
Mm9::chr19:45886783..45886797,-p2@Kcnip2
Mm9::chr1:89052702..89052720,-p1@Ecel1
Mm9::chr2:120070791..120070807,-p4@Pla2g4e
Mm9::chr2:120070813..120070841,-p2@Pla2g4e
Mm9::chr2:164786309..164786333,+p4@Slc12a5
Mm9::chr2:164786346..164786363,+p3@Slc12a5
Mm9::chr2:171868546..171868561,-p1@Cbln4
Mm9::chr2:180773900..180773933,-p3@Chrna4
Mm9::chr2:180773937..180773987,-p1@Chrna4
Mm9::chr2:32597922..32597930,-p@chr2:32597922..32597930
-
Mm9::chr2:70400911..70400928,+p12@Gad1
Mm9::chr5:145497411..145497422,-p@chr5:145497411..145497422
-
Mm9::chr5:145522434..145522445,-p2@Tmem130
Mm9::chr5:145522447..145522500,-p1@Tmem130
Mm9::chr5:145522502..145522513,-p3@Tmem130
Mm9::chr5:27230997..27231021,+p9@Dpp6
Mm9::chr6:144997329..144997341,-p14@Bcat1
Mm9::chr6:82889628..82889646,-p3@Sema4f
Mm9::chr7:106416063..106416074,+p5@Mtap6
Mm9::chr7:134094351..134094362,+p8@Sez6l2
Mm9::chr7:16858609..16858680,-p1@Prr24
Mm9::chr7:54389067..54389090,-p5@Ptpn5
Mm9::chr7:57230598..57230710,+p1@Nell1
Mm9::chr7:58877250..58877261,+p9@Slc17a6
Mm9::chr7:58877364..58877383,+p5@Slc17a6
Mm9::chr7:58877403..58877419,+p2@Slc17a6
Mm9::chr7:88638750..88638757,-p6@Ap3b2
Mm9::chr8:111061744..111061761,-p@chr8:111061744..111061761
-
Mm9::chr8:116729490..116729542,+p1@Vat1l
Mm9::chr9:20842219..20842239,-p1@ENSMUST00000164156
Mm9::chr9:59437137..59437160,+p2@Celf6
Mm9::chrX:33735923..33735927,+p4@Zcchc12
Mm9::chrX:33735933..33735940,+p3@Zcchc12
Mm9::chrX:33735945..33735954,+p2@Zcchc12
Mm9::chrX:33735963..33735988,+p1@Zcchc12
Mm9::chrX:56387556..56387569,-p11@Fgf13
Mm9::chrX:56387570..56387597,-p7@Fgf13
Mm9::chrX:70070500..70070522,+p2@Gabrq
Mm9::chrX:70070529..70070552,+p1@Gabrq
Mm9::chrX:8469480..8469498,+p2@B630019K06Rik
Mm9::chrX:8469502..8469549,+p1@B630019K06Rik
Mm9::chrX:8469569..8469580,+p3@B630019K06Rik


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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