Personal tools

MCL coexpression mm9:1012: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
|coexpression_dpi_cluster_scores_mean=-0.00276583785240547,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,0.115765343442022,0.0310327685563821,0.00262513463084461,0.00821784127514743,0.0250348109585004,0.0776517481441277,0.103616124440626,0.0283156909981617,-0.00975887685812469,-0.0211983272199986,0.0210124022699999,0.0378182505316507,0.000748645617268043,0.0849788401261121,0.00715139919968352,-0.00680062872488304,0.00642530951157756,-0.00838454330901714,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,0.0872581186626742,0.0146224849345585,0.0493698363096122,0.128000036921389,0.0856677979465385,0.0279090107506956,-0.0138413855448998,-0.0211983272199986,-0.0107432675066119,-0.0211983272199986,0.0032748893669029,-0.00887716951685993,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,0.00637697285707152,0.169775317374688,0.09247195034652,-0.0211983272199986,-0.0055667445060977,0.0046024233686511,0.0745545536008368,0.0051452332332857,0.00925984982006624,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,0.0724952034826609,0.0688835173873555,0.0468014898998506,0.0224277786883442,0.00149968260598596,0.027497991972256,0.0328005356558466,0.0596943831081041,0.0248672268564546,0.152544225740485,0.122027077225505,0.0300601840376468,0.029424815859137,0.0751199360699914,0.00935386671713309,0.0401553536360858,0.155135442997568,0.0878938138030808,0.0923469510299231,0.0275678489732322,-0.0121406861964423,-0.0121585242949182,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,0.00557838849714796,0.00986240011375306,-0.0211983272199986,-0.00489143445742956,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,0.0105493882890616,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,-0.00903991081046457,-0.0211983272199986,-0.0211983272199986,0.023254979876273,0.0987455560644449,0.024893600369057,-0.0027185938133779,0.0282727829149134,-0.0211983272199986,0.0376250727721308,0.0826040704716767,0.0220891111616582,-0.0211983272199986,0.025935453575727,-0.0211983272199986,0.0126492901952603,0.256691991192393,0.0523830882271469,-0.0211983272199986,0.385070670408926,0.308307442205501,0.0211453277552622,0.0131918373318664,-0.0211983272199986,0.0010663774310574,0.231618900021448,0.446626783398053,0.291303489702976,0.298934227774847,0.479906655197235,0.147090383930438,0.351817405033396,0.0669945361701518,0.076499643559793,0.00676023489397101,0.0989850382204897,0.0135989935271088,-0.0211983272199986,0.0124575574486813,0.171147083095443,0.168217736734186,0.137536732386719,0.110836688881055,0.226096160678841,-0.0211983272199986,-0.0211983272199986,-0.00108710675853726,0.00339408244557727,0.101303337883766,0.0158791375896129,0.0001874810203176,0.0333764221607619,-0.0211983272199986,-0.0211983272199986,0.025353239147751,-0.00951939545529889,0.0329270147317297,0.049944759935788,0.0292169838837178,0.0298722821502313,0.102374509511528,0.0932318954209203,0.00829106832218739,0.113040939695283,0.0987978315657785,0.123698862099888,0.0689426534600179,0.0531375775295935,0.0931027652794913,0.0643405471257896,0.256158025905386,0.299559949276562,-0.0211983272199986,-0.00664091930676342,0.026781096732969,0.11257617769776,-0.013677905071713,-0.00979974051585254,-0.0211983272199986,0.000410043234881886,-0.0211983272199986,-0.00353332843621461,0.0457994913738399,0.0220998097867713,0.0307073256328152,0.0583684334030577,0.0665306299694933,0.0238704449072784,-0.0211983272199986,0.0117045725317559,0.0256278562720778,0.00180187257371229,0.0347668466405389,0.0447811354756743,0.0144284865536577,0.0261378611366488,0.0307809315580057,0.000458811269042785,-0.0211983272199986,-0.0020516961005313,-0.0100648820884217,0.00184244363608147,0.0210585010210588,-0.00779350221118518,-0.0071248655048569,0.0258645554920449,0.0517060725269898,0.0360598707588013,0.552804024296282,0.113978031537605,0.0257377412139512,0.0460869974598852,-0.0109611599324127,-0.0211983272199986,0.0720459555579812,-0.00126134769356504,-0.00369538700930047,0.0546219706610626,0.0380307666008156,0.0159450686064716,0.0203043370229568,0.129982009467862,0.0928580052868076,0.108820404068754,0.0957692388154992,0.17823675024991,0.184284592486035,0.115525993705723,-0.0211983272199986,0.00574749650088966,0.028430301869364,-0.00607987792491149,0.0727625047633245,0.139383372951554,-0.00360468101233856,0.0277504491154538,-0.0211983272199986,-0.0211983272199986,0.0097304035044791,-0.0079039887497713,0.0105586935999656,0.0375644336688695,-0.000110069080498643,0.0359146598359918,0.0201341842188388,0.461861879583407,0.0190094507287448,0.018036053062804,0.0849196274078171,0.0973301535935912,-0.0211983272199986,0.0642744135753438,-0.00480991345902316,0.0216802910518495,-0.00514532719433611,-0.00456687636569163,0.00732409390626345,0.0437926839817674,0.0166356609986871,0.0603079265392576,-0.0211983272199986,-0.0211983272199986,0.0432406745019768,0.0591898463664241,-0.0211983272199986,0.0172150035292683,0.0178932213541456,0.105770986565355,0.0673495796697088,-0.0211983272199986,0.0288340019957403,-0.0211983272199986,-0.0211983272199986,0.0059532255541464,0.0240237052031075,-0.0072466932520172,-0.0211983272199986,-0.0117689632823643,0.0336531143938065,0.177025002437079,0.131731888127388,0.0216795620904768,0.0706974279736749,0.19411383884533,0.179684224321294,0.192769135172044,0.0882142441614501,0.0423360948593832,0.0425970290955159,-0.0211983272199986,-0.00414593340503693,-0.00971533540415094,0.0883888504376625,0.062693716421735,0.0300043459264674,0.0586241152837781,0.0256332215798369,0.0193475591893314,0.0612584738125597,-0.0211983272199986,-0.0211983272199986,-0.00390826240618621,-0.011698782921978,0.0387185345199134,0.0446221416252921,0.1388686362698,0.095763620371216,0.0615821393839256,0.0582177176484054,0.0639258820925055,0.0331435101529272,0.302014118536601,-8.18225200477135e-05,0.0960743203490366,0.205014857077694,0.103546996474877,0.23663600563295,0.464940908242371,0.440768017942184,0.484532151405919,0.490558618016395,0.610852003496804,0.58135420783971,0.587888842040605,0.594940088811776,0.0041585647793555,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,0.0290211376390449,0.0690252845455944,0.0129877682653483,-0.0211983272199986,0.632671245456386,0.507618462013764,0.540948744946692,0.471228383189403,0.306310232387486,0.325209197647471,0.278958232602859,0.315879152749412,0.430723781361474,0.477358328549903,-0.00894535248925736,0.0568663263624474,0.0250328454794934,0.113723351215626,-0.00939168378598696,-0.0107277133544528,0.07288305022233,0.0252930625719465,0.0799380841274391,0.0181583033100623,0.0182614567226576,0.0136809157360081,0.0522922072487578,0.0562558165093988,0.0207117764787045,0.0203174554392071,0.0826792747119268,0.129236101202038,0.0589142401467459,0.0929400495877941,0.208838162682525,0.0974579501122651,0.104841018000062,0.0691853045961393,0.0367882003334215,0.0710868144661318,0.076744058910703,0.144207524520315,0.0802832089492764,0.0721741330930319,0.0356963413807752,0.114687229842603,0.14016907238366,0.0475806440876468,0.0318765351841332,0.0900680210406838,0.0179264253275207,0.0217436650951193,0.0097596885678061,-0.0211983272199986,-0.0211983272199986
|coexpression_dpi_cluster_scores_mean=-0.00276583785240547,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,0.115765343442022,0.0310327685563821,0.00262513463084461,0.00821784127514743,0.0250348109585004,0.0776517481441277,0.103616124440626,0.0283156909981617,-0.00975887685812469,-0.0211983272199986,0.0210124022699999,0.0378182505316507,0.000748645617268043,0.0849788401261121,0.00715139919968352,-0.00680062872488304,0.00642530951157756,-0.00838454330901714,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,0.0872581186626742,0.0146224849345585,0.0493698363096122,0.128000036921389,0.0856677979465385,0.0279090107506956,-0.0138413855448998,-0.0211983272199986,-0.0107432675066119,-0.0211983272199986,0.0032748893669029,-0.00887716951685993,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,0.00637697285707152,0.169775317374688,0.09247195034652,-0.0211983272199986,-0.0055667445060977,0.0046024233686511,0.0745545536008368,0.0051452332332857,0.00925984982006624,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,0.0724952034826609,0.0688835173873555,0.0468014898998506,0.0224277786883442,0.00149968260598596,0.027497991972256,0.0328005356558466,0.0596943831081041,0.0248672268564546,0.152544225740485,0.122027077225505,0.0300601840376468,0.029424815859137,0.0751199360699914,0.00935386671713309,0.0401553536360858,0.155135442997568,0.0878938138030808,0.0923469510299231,0.0275678489732322,-0.0121406861964423,-0.0121585242949182,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,0.00557838849714796,0.00986240011375306,-0.0211983272199986,-0.00489143445742956,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,0.0105493882890616,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,-0.00903991081046457,-0.0211983272199986,-0.0211983272199986,0.023254979876273,0.0987455560644449,0.024893600369057,-0.0027185938133779,0.0282727829149134,-0.0211983272199986,0.0376250727721308,0.0826040704716767,0.0220891111616582,-0.0211983272199986,0.025935453575727,-0.0211983272199986,0.0126492901952603,0.256691991192393,0.0523830882271469,-0.0211983272199986,0.385070670408926,0.308307442205501,0.0211453277552622,0.0131918373318664,-0.0211983272199986,0.0010663774310574,0.231618900021448,0.446626783398053,0.291303489702976,0.298934227774847,0.479906655197235,0.147090383930438,0.351817405033396,0.0669945361701518,0.076499643559793,0.00676023489397101,0.0989850382204897,0.0135989935271088,-0.0211983272199986,0.0124575574486813,0.171147083095443,0.168217736734186,0.137536732386719,0.110836688881055,0.226096160678841,-0.0211983272199986,-0.0211983272199986,-0.00108710675853726,0.00339408244557727,0.101303337883766,0.0158791375896129,0.0001874810203176,0.0333764221607619,-0.0211983272199986,-0.0211983272199986,0.025353239147751,-0.00951939545529889,0.0329270147317297,0.049944759935788,0.0292169838837178,0.0298722821502313,0.102374509511528,0.0932318954209203,0.00829106832218739,0.113040939695283,0.0987978315657785,0.123698862099888,0.0689426534600179,0.0531375775295935,0.0931027652794913,0.0643405471257896,0.256158025905386,0.299559949276562,-0.0211983272199986,-0.00664091930676342,0.026781096732969,0.11257617769776,-0.013677905071713,-0.00979974051585254,-0.0211983272199986,0.000410043234881886,-0.0211983272199986,-0.00353332843621461,0.0457994913738399,0.0220998097867713,0.0307073256328152,0.0583684334030577,0.0665306299694933,0.0238704449072784,-0.0211983272199986,0.0117045725317559,0.0256278562720778,0.00180187257371229,0.0347668466405389,0.0447811354756743,0.0144284865536577,0.0261378611366488,0.0307809315580057,0.000458811269042785,-0.0211983272199986,-0.0020516961005313,-0.0100648820884217,0.00184244363608147,0.0210585010210588,-0.00779350221118518,-0.0071248655048569,0.0258645554920449,0.0517060725269898,0.0360598707588013,0.552804024296282,0.113978031537605,0.0257377412139512,0.0460869974598852,-0.0109611599324127,-0.0211983272199986,0.0720459555579812,-0.00126134769356504,-0.00369538700930047,0.0546219706610626,0.0380307666008156,0.0159450686064716,0.0203043370229568,0.129982009467862,0.0928580052868076,0.108820404068754,0.0957692388154992,0.17823675024991,0.184284592486035,0.115525993705723,-0.0211983272199986,0.00574749650088966,0.028430301869364,-0.00607987792491149,0.0727625047633245,0.139383372951554,-0.00360468101233856,0.0277504491154538,-0.0211983272199986,-0.0211983272199986,0.0097304035044791,-0.0079039887497713,0.0105586935999656,0.0375644336688695,-0.000110069080498643,0.0359146598359918,0.0201341842188388,0.461861879583407,0.0190094507287448,0.018036053062804,0.0849196274078171,0.0973301535935912,-0.0211983272199986,0.0642744135753438,-0.00480991345902316,0.0216802910518495,-0.00514532719433611,-0.00456687636569163,0.00732409390626345,0.0437926839817674,0.0166356609986871,0.0603079265392576,-0.0211983272199986,-0.0211983272199986,0.0432406745019768,0.0591898463664241,-0.0211983272199986,0.0172150035292683,0.0178932213541456,0.105770986565355,0.0673495796697088,-0.0211983272199986,0.0288340019957403,-0.0211983272199986,-0.0211983272199986,0.0059532255541464,0.0240237052031075,-0.0072466932520172,-0.0211983272199986,-0.0117689632823643,0.0336531143938065,0.177025002437079,0.131731888127388,0.0216795620904768,0.0706974279736749,0.19411383884533,0.179684224321294,0.192769135172044,0.0882142441614501,0.0423360948593832,0.0425970290955159,-0.0211983272199986,-0.00414593340503693,-0.00971533540415094,0.0883888504376625,0.062693716421735,0.0300043459264674,0.0586241152837781,0.0256332215798369,0.0193475591893314,0.0612584738125597,-0.0211983272199986,-0.0211983272199986,-0.00390826240618621,-0.011698782921978,0.0387185345199134,0.0446221416252921,0.1388686362698,0.095763620371216,0.0615821393839256,0.0582177176484054,0.0639258820925055,0.0331435101529272,0.302014118536601,-8.18225200477135e-05,0.0960743203490366,0.205014857077694,0.103546996474877,0.23663600563295,0.464940908242371,0.440768017942184,0.484532151405919,0.490558618016395,0.610852003496804,0.58135420783971,0.587888842040605,0.594940088811776,0.0041585647793555,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,-0.0211983272199986,0.0290211376390449,0.0690252845455944,0.0129877682653483,-0.0211983272199986,0.632671245456386,0.507618462013764,0.540948744946692,0.471228383189403,0.306310232387486,0.325209197647471,0.278958232602859,0.315879152749412,0.430723781361474,0.477358328549903,-0.00894535248925736,0.0568663263624474,0.0250328454794934,0.113723351215626,-0.00939168378598696,-0.0107277133544528,0.07288305022233,0.0252930625719465,0.0799380841274391,0.0181583033100623,0.0182614567226576,0.0136809157360081,0.0522922072487578,0.0562558165093988,0.0207117764787045,0.0203174554392071,0.0826792747119268,0.129236101202038,0.0589142401467459,0.0929400495877941,0.208838162682525,0.0974579501122651,0.104841018000062,0.0691853045961393,0.0367882003334215,0.0710868144661318,0.076744058910703,0.144207524520315,0.0802832089492764,0.0721741330930319,0.0356963413807752,0.114687229842603,0.14016907238366,0.0475806440876468,0.0318765351841332,0.0900680210406838,0.0179264253275207,0.0217436650951193,0.0097596885678061,-0.0211983272199986,-0.0211983272199986
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0.0829855267158217,0.00667189594847055,0,0,0.0333321253665857,0,0,0,0,0,0,0.00527084900728688,0,0.0682179984609265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101305701094645,0,0,0.103058834626455,0,0,0,0,0,0,0,0,0,0,0,0,0.186346941352496,0.125836948423969,0,0,0,0.0800187930544913,0,0,0,0,0,0,0,0,0,0.0428469550828748,0.0498268635361582,0,0,0,0.0446296092067951,0,0,0,0.140841653605462,0.149635317404076,0,0,0,0,0,0.163875090269313,0.112145192034931,0.0578074284787346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100004302423367,0,0,0,0,0.016570945642889,0.0917293418104957,0.000876453708818198,0,0,0,0,0.274934742957371,0,0,0.273774759912798,0.353470026308997,0,0,0,0,0.203892612769831,0.451786805560604,0.328560861944801,0.339617050746205,0.511588478301048,0.150933218241173,0.361336814746809,0.0421182837367051,0.0509235292940968,0,0.0829439327499637,0,0,0,0.162000848159969,0.127163941277894,0.141243132041307,0.107584785071413,0.249469886918853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116785086449131,0,0,0.0798956667191994,0.0661618130246221,0.0660154575426048,0.0945432472053936,0.0135419734956004,0.0861996515928926,0.0546921007390138,0.265091482557376,0.284688191079466,0,0,0,0.0906941294286938,0,0,0,0,0,0,0,0,0,0,0.0581717775558243,0,0,0,0,0,0,0.0323982684139792,0.0266298923127834,0,0.0207395568933526,0,0,0,0,0,0,0,0,0,0.0147233426285711,0,0.490457547819596,0.137398724818722,0,0,0,0,0.0736278867910527,0,0,0,0,0,0,0.0925649835117229,0.0635717028550276,0.086880916817156,0.0642538110976656,0.218916923110154,0.181287491017976,0.0598200252978948,0,0,0,0,0.0646640766951323,0.130859448321889,0,0,0,0,0,0,0,0,0,0,0,0.466560377831798,0,0,0.0150041772150549,0.0663147875126409,0,0.0943944778653996,0,0,0,0,0,0,0,0.0687346964907525,0,0,0,0,0,0,0,0.132495872273197,0.0661577744756082,0,0,0,0,0,0.0144725896380686,0,0,0,0,0.190440329925186,0.127668937363575,0,0.0737896374598673,0.243899288077882,0.189427680629844,0.280669350843185,0.0681778550615498,0,0,0,0,0,0.0445418537893845,0,0,0,0.0159069991268384,0,0.0835483580577519,0,0,0,0,0,0,0.126427630498926,0.0481920468563092,0.0842221451448433,0.0433069931089932,0.0939761495634833,0,0.289596390303526,0,0.110657800689054,0.181753088664001,0.0715236385554987,0.253998013872276,0.428577984635345,0.344981235602384,0.41754861367346,0.463171575677559,0.546623423443437,0.536109652550868,0.544255108375549,0.566810783746467,0,0,0,0,0,0,0,0,0,0.582490536396736,0.650585215712955,0.58709079061676,0.509752285554761,0.374778587894724,0.244374584202533,0.224020645200257,0.278900414858752,0.372806586713801,0.487285649470539,0,0,0,0.0945084131504676,0,0,0.0366255601033431,0,0,0,0,0,0.0569902168559446,0.0523284672130554,0.0242538736058389,0,0,0.0260740722880436,0,0,0.226790206858766,0,0.092873634605593,0,0.0390607415003592,0.0678996586311492,0,0.0508939976892043,0.0553034373508932,0,0,0.0937350364414226,0.0984488783059477,0,0.0438497331963218,0,0,0,0,0,0
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
}}
}}

Revision as of 12:50, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:126521637..126521642,+p@chr10:126521637..126521642
+
Mm9::chr10:126521712..126521729,+p@chr10:126521712..126521729
+
Mm9::chr10:126521782..126521802,+p@chr10:126521782..126521802
+
Mm9::chr2:6504762..6504771,-p@chr2:6504762..6504771
-
Mm9::chr2:6559182..6559186,-p@chr2:6559182..6559186
-
Mm9::chr8:75211095..75211107,+p@chr8:75211095..75211107
+
Mm9::chr8:75212325..75212338,+p@chr8:75212325..75212338
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:1012&oldid=2150298"