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MCL coexpression mm9:1704: Difference between revisions

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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0019962;interferon-alpha/beta binding;0.00716555271254392;15976!GO:0004905;interferon-alpha/beta receptor activity;0.00716555271254392;15976!GO:0031420;alkali metal ion binding;0.00716555271254392;170756,52076!GO:0019961;interferon binding;0.00716555271254392;15976!GO:0004904;interferon receptor activity;0.00716555271254392;15976!GO:0015672;monovalent inorganic cation transport;0.0127935267215249;170756,52076!GO:0031403;lithium ion binding;0.0127935267215249;170756!GO:0030001;metal ion transport;0.0182562381973343;170756,52076!GO:0006812;cation transport;0.0225438329574293;170756,52076!GO:0005783;endoplasmic reticulum;0.0415918453894984;170756,52076!GO:0006811;ion transport;0.0415918453894984;170756,52076!
|gostat_on_MCL_coexpression=GO:0019962;interferon-alpha/beta binding;0.00716555271254392;15976!GO:0004905;interferon-alpha/beta receptor activity;0.00716555271254392;15976!GO:0031420;alkali metal ion binding;0.00716555271254392;170756,52076!GO:0019961;interferon binding;0.00716555271254392;15976!GO:0004904;interferon receptor activity;0.00716555271254392;15976!GO:0015672;monovalent inorganic cation transport;0.0127935267215249;170756,52076!GO:0031403;lithium ion binding;0.0127935267215249;170756!GO:0030001;metal ion transport;0.0182562381973343;170756,52076!GO:0006812;cation transport;0.0225438329574293;170756,52076!GO:0005783;endoplasmic reticulum;0.0415918453894984;170756,52076!GO:0006811;ion transport;0.0415918453894984;170756,52076!
}}
}}

Revision as of 13:01, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr16:91373031..91373109,+p1@Ifnar2
Mm9::chr2:131036237..131036288,+p2@2310035K24Rik
Mm9::chr4:53838886..53838979,+p1@Tmem38b
Mm9::chr5:120961182..120961220,+p2@Slc24a6
Mm9::chr5:120961222..120961255,+p1@Slc24a6


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0019962interferon-alpha/beta binding0.00716555271254392
GO:0004905interferon-alpha/beta receptor activity0.00716555271254392
GO:0031420alkali metal ion binding0.00716555271254392
GO:0019961interferon binding0.00716555271254392
GO:0004904interferon receptor activity0.00716555271254392
GO:0015672monovalent inorganic cation transport0.0127935267215249
GO:0031403lithium ion binding0.0127935267215249
GO:0030001metal ion transport0.0182562381973343
GO:0006812cation transport0.0225438329574293
GO:0005783endoplasmic reticulum0.0415918453894984
GO:0006811ion transport0.0415918453894984



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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