Personal tools

MCL coexpression mm9:2914: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
|coexpression_dpi_cluster_scores_mean=-0.0092127421742569,-0.334586048062107,-0.186960141565715,-0.275803596390922,-0.254672126731169,-0.354592204431902,-0.361031321988873,-0.377077074478361,-0.352663001265835,-0.345248729393166,-0.412347158526939,-0.379308810336631,-0.445241980025865,-0.421132667786943,-0.446247482421013,-0.386633051312982,-0.411090458245031,-0.417058181373866,-0.382364060856842,-0.487869451952664,0.517090151313391,-0.395438618020924,-0.454274822130727,-0.379094453570949,-0.362559545136482,-0.356490301075513,-0.367779852019229,-0.339497436324098,-0.312415659965346,-0.373815569860165,-0.365393680154595,-0.26048222092601,-0.371759419554532,-0.487869451952664,-0.342317096470041,-0.281558669667864,-0.264607414421873,-0.437256443874083,-0.487869451952664,-0.426919709602679,-0.487869451952664,-0.487869451952664,-0.487869451952664,-0.232115282139695,-0.288963513271735,-0.208854375440232,0.530622573312361,0.475613373240288,0.570750306925319,0.530882261870596,0.433465857680469,0.135820386396241,-0.336477726994483,-0.487869451952664,-0.413441119225813,0.203217746103823,0.277337895996532,0.210200531791825,0.14084565258885,0.14507942728259,0.143389790114681,0.121502626692983,0.275499869566976,-0.380300795976327,-0.188861481847325,-0.282167556999278,0.421721221980341,0.455374776926729,-0.135851679141874,-0.0558552957425793,-0.0990959837983203,0.800183686399772,0.639948894647664,-0.0929152765416521,-0.115309867801084,-0.000753862882726668,1.11437948527649,1.16529613739805,1.14437257581388,0.143587936019515,0.161526950707245,0.0415818187502763,1.15546805164438,1.00657193628706,1.0800166884892,0.518822967612107,0.542612034630339,0.230468415741087,-0.335569588201796,-0.17850386296719,-0.0391793270896872,0.408804298375214,0.49348305541121,0.518358953362512,0.573406494515817,0.65811951172287,0.716458110230424,-0.266883200189166,-0.35186208877654,-0.400264930824745,0.0319961830683805,-0.368350693124515,-0.487869451952664,-0.487869451952664,-0.187544480234919,-0.22172137542084,-0.145272591297597,0.415616100113107,-0.074534865463648,0.206220579653779,-0.0697255926682035,0.12832577357826,0.0842560580105757,0.129257248884674,0.177180823404629,0.216513335499895,0.00598312872066201,0.471595087038389,0.307236143440709,0.473316907079361,0.68912314626645,0.476267466912093,-0.214869147036572,0.75240902425996,0.723149856494345,-0.0354818416212807,-0.427033421971321,-0.419838258708383,-0.423799150049852,0.8502133633096,0.481721853584978,0.163408753515746,0.769497288933743,0.5450348878132,0.885676937361507,0.628829763044434,0.0339497209696734,0.240741552577879,-0.0306749671857775,0.305512188185269,-0.409500802271688,-0.347132745283953,-0.24327144943933,-0.152706305432523,0.012552511531107,-0.0052878067442765,0.0031465283817686,0.332025370884949,-0.387404521611653,-0.391523444794622,-0.219896882416954,-0.197561522653691,-0.145526759343002,-0.0457668833470177,0.0130464004332624,-0.223490170185162,-0.487869451952664,-0.427760976862601,-0.32367532822874,0.0017846305520077,0.114873070093487,0.105191699029561,0.166432950727571,0.253934220306407,0.272226118902976,0.429226012052363,0.490707667707926,0.517230288052331,0.548131855040598,0.684996972831551,0.892520040749236,0.885383258428621,0.854335187831798,0.864138631590801,0.548483543395485,0.152229327762859,-0.20523919794999,-0.0344624495574783,-0.309261933607534,-0.331298434998567,-0.125786161727095,-0.0259265789069767,-0.0687908308133394,0.0549660569856202,-0.0932063949916877,0.0482174283452533,-0.117807550397289,-0.0362933806475699,-0.109574609744657,0.020903817590562,-0.0298633730979057,-0.00147992619625067,-0.261977855513711,-0.216906968307733,-0.240863342427105,-0.0865598480435635,-0.089988234873806,-0.0204934221808081,0.0296741256599224,0.125709001802021,0.0987810528339333,0.120992926856295,0.535613833822948,-0.334170331204063,-0.258004901130817,-0.359471805453428,-0.317680436423367,-0.327043145895794,-0.18181127232762,-0.008567782632842,0.0283232068810912,-0.121822974908475,0.0225348807539275,-0.101778038484773,0.110546520837664,0.275533123353991,0.402073872177326,0.502533536018182,0.202433952904899,-0.235165196393519,-0.162465569049682,-0.193516381181889,-0.0691132172709956,0.132381958399659,0.164612683956503,0.148208596556117,-0.00821168972954067,-0.0538604749087963,0.120069740350485,0.162412775075253,0.0993550596224933,0.202272134841647,-0.177390882709854,-0.234833236174477,-0.0329020888758495,0.124454385418549,0.847674102192924,0.830265624352854,-0.366741143719637,0.980842376259735,0.18800045998143,0.268422943257064,0.296025045923115,0.191066646373535,0.249698837602484,0.251042218377661,0.17515010654952,0.232058354626213,0.239935004298212,0.581104686184266,0.210349259851027,-0.0156533438686384,0.0944948976997019,0.200034480508286,-0.022913055726849,-0.274346313371073,-0.1851069538536,-0.121696294175799,0.0191410895336743,-0.0373575060569874,0.0864905520576353,-0.0907218386807847,-0.0394065027104887,-0.0123964083559527,-0.084558596637318,-0.0803258895901953,-0.0591088595882985,-0.334742351097777,-0.297596970853037,-0.220777007154246,-0.05543676167767,0.0539451916968898,0.12685781759958,0.251562958947224,-0.211143685854511,-0.255520284653622,0.0266986893101348,0.360715125708156,0.193691354682624,0.0598608133789674,0.00919976152751916,-0.0442995304248827,-0.011732736776744,0.90666769842369,-0.147840413968823,-0.160969388157717,-0.107972927300145,-0.261697066266543,-0.320025390786613,-0.232600703219779,-0.33767813393733,-0.359155762964791,-0.343482691731621,0.338758633818391,-0.426823346360657,-0.0508499413237453,-0.0116704529007908,0.0818092897552621,0.0126530641377165,0.0411434532452322,0.0372961176326381,0.171029548057615,-0.0786692168482597,-0.0018155235234602,-0.0999742044519303,-0.178475418874547,-0.0899008759657532,0.0217598046549007,0.01236208911529,0.0713127854652661,0.0730592419497414,-0.0385113137806827,0.0125383774676748,-0.195063874570165,0.26454536499476,-0.31090657702013,-0.321614031775456,-0.266986544539485,-0.174771361303519,-0.244245023718885,-0.192225680975837,-0.309075676371781,-0.232238562073586,-0.280793557951616,-0.311595817948759,-0.278897769695937,-0.334749585737821,-0.380303349240202,-0.361898488743699,0.905741866172666,-0.366851025616291,-0.351234337172872,-0.357731762665454,0.334390950717393,-0.0681279379943497,0.0576897384936181,-0.0391420952426674,-0.10779043985084,0.451254469213628,0.501535088320536,0.532395248316435,0.637064353382613,0.481287907575052,0.389995798350915,0.402022076976329,0.568002628291132,0.560504954327943,0.663196292598895,-0.314728818943878,-0.166440553279075,-0.252080681572748,-0.0493993379424596,-0.069585295541098,0.0600093705849697,0.223015346498724,0.172940764557269,0.167397453998713,0.183044968900082,0.278399587236913,0.267916688149684,0.208868419849321,0.241960595701932,0.213839491892274,0.316107680742882,0.298053836586331,0.264082660485936,0.354699262799121,0.197028348419142,0.211651821356065,0.260850214486882,0.180823226463709,0.235263030920138,0.243146413641199,0.212209856317825,0.120192588774586,0.246270452059799,0.133085342801576,0.077706135026584,0.172487222464097,0.216750582381929,0.234162505396407,0.248571850020311,0.128378048900722,0.127425705047348,0.237473954014899,0.326751788520525,0.530664319954565,0.609400046271242,0.632113083375118
|coexpression_dpi_cluster_scores_mean=-0.0092127421742569,-0.334586048062107,-0.186960141565715,-0.275803596390922,-0.254672126731169,-0.354592204431902,-0.361031321988873,-0.377077074478361,-0.352663001265835,-0.345248729393166,-0.412347158526939,-0.379308810336631,-0.445241980025865,-0.421132667786943,-0.446247482421013,-0.386633051312982,-0.411090458245031,-0.417058181373866,-0.382364060856842,-0.487869451952664,0.517090151313391,-0.395438618020924,-0.454274822130727,-0.379094453570949,-0.362559545136482,-0.356490301075513,-0.367779852019229,-0.339497436324098,-0.312415659965346,-0.373815569860165,-0.365393680154595,-0.26048222092601,-0.371759419554532,-0.487869451952664,-0.342317096470041,-0.281558669667864,-0.264607414421873,-0.437256443874083,-0.487869451952664,-0.426919709602679,-0.487869451952664,-0.487869451952664,-0.487869451952664,-0.232115282139695,-0.288963513271735,-0.208854375440232,0.530622573312361,0.475613373240288,0.570750306925319,0.530882261870596,0.433465857680469,0.135820386396241,-0.336477726994483,-0.487869451952664,-0.413441119225813,0.203217746103823,0.277337895996532,0.210200531791825,0.14084565258885,0.14507942728259,0.143389790114681,0.121502626692983,0.275499869566976,-0.380300795976327,-0.188861481847325,-0.282167556999278,0.421721221980341,0.455374776926729,-0.135851679141874,-0.0558552957425793,-0.0990959837983203,0.800183686399772,0.639948894647664,-0.0929152765416521,-0.115309867801084,-0.000753862882726668,1.11437948527649,1.16529613739805,1.14437257581388,0.143587936019515,0.161526950707245,0.0415818187502763,1.15546805164438,1.00657193628706,1.0800166884892,0.518822967612107,0.542612034630339,0.230468415741087,-0.335569588201796,-0.17850386296719,-0.0391793270896872,0.408804298375214,0.49348305541121,0.518358953362512,0.573406494515817,0.65811951172287,0.716458110230424,-0.266883200189166,-0.35186208877654,-0.400264930824745,0.0319961830683805,-0.368350693124515,-0.487869451952664,-0.487869451952664,-0.187544480234919,-0.22172137542084,-0.145272591297597,0.415616100113107,-0.074534865463648,0.206220579653779,-0.0697255926682035,0.12832577357826,0.0842560580105757,0.129257248884674,0.177180823404629,0.216513335499895,0.00598312872066201,0.471595087038389,0.307236143440709,0.473316907079361,0.68912314626645,0.476267466912093,-0.214869147036572,0.75240902425996,0.723149856494345,-0.0354818416212807,-0.427033421971321,-0.419838258708383,-0.423799150049852,0.8502133633096,0.481721853584978,0.163408753515746,0.769497288933743,0.5450348878132,0.885676937361507,0.628829763044434,0.0339497209696734,0.240741552577879,-0.0306749671857775,0.305512188185269,-0.409500802271688,-0.347132745283953,-0.24327144943933,-0.152706305432523,0.012552511531107,-0.0052878067442765,0.0031465283817686,0.332025370884949,-0.387404521611653,-0.391523444794622,-0.219896882416954,-0.197561522653691,-0.145526759343002,-0.0457668833470177,0.0130464004332624,-0.223490170185162,-0.487869451952664,-0.427760976862601,-0.32367532822874,0.0017846305520077,0.114873070093487,0.105191699029561,0.166432950727571,0.253934220306407,0.272226118902976,0.429226012052363,0.490707667707926,0.517230288052331,0.548131855040598,0.684996972831551,0.892520040749236,0.885383258428621,0.854335187831798,0.864138631590801,0.548483543395485,0.152229327762859,-0.20523919794999,-0.0344624495574783,-0.309261933607534,-0.331298434998567,-0.125786161727095,-0.0259265789069767,-0.0687908308133394,0.0549660569856202,-0.0932063949916877,0.0482174283452533,-0.117807550397289,-0.0362933806475699,-0.109574609744657,0.020903817590562,-0.0298633730979057,-0.00147992619625067,-0.261977855513711,-0.216906968307733,-0.240863342427105,-0.0865598480435635,-0.089988234873806,-0.0204934221808081,0.0296741256599224,0.125709001802021,0.0987810528339333,0.120992926856295,0.535613833822948,-0.334170331204063,-0.258004901130817,-0.359471805453428,-0.317680436423367,-0.327043145895794,-0.18181127232762,-0.008567782632842,0.0283232068810912,-0.121822974908475,0.0225348807539275,-0.101778038484773,0.110546520837664,0.275533123353991,0.402073872177326,0.502533536018182,0.202433952904899,-0.235165196393519,-0.162465569049682,-0.193516381181889,-0.0691132172709956,0.132381958399659,0.164612683956503,0.148208596556117,-0.00821168972954067,-0.0538604749087963,0.120069740350485,0.162412775075253,0.0993550596224933,0.202272134841647,-0.177390882709854,-0.234833236174477,-0.0329020888758495,0.124454385418549,0.847674102192924,0.830265624352854,-0.366741143719637,0.980842376259735,0.18800045998143,0.268422943257064,0.296025045923115,0.191066646373535,0.249698837602484,0.251042218377661,0.17515010654952,0.232058354626213,0.239935004298212,0.581104686184266,0.210349259851027,-0.0156533438686384,0.0944948976997019,0.200034480508286,-0.022913055726849,-0.274346313371073,-0.1851069538536,-0.121696294175799,0.0191410895336743,-0.0373575060569874,0.0864905520576353,-0.0907218386807847,-0.0394065027104887,-0.0123964083559527,-0.084558596637318,-0.0803258895901953,-0.0591088595882985,-0.334742351097777,-0.297596970853037,-0.220777007154246,-0.05543676167767,0.0539451916968898,0.12685781759958,0.251562958947224,-0.211143685854511,-0.255520284653622,0.0266986893101348,0.360715125708156,0.193691354682624,0.0598608133789674,0.00919976152751916,-0.0442995304248827,-0.011732736776744,0.90666769842369,-0.147840413968823,-0.160969388157717,-0.107972927300145,-0.261697066266543,-0.320025390786613,-0.232600703219779,-0.33767813393733,-0.359155762964791,-0.343482691731621,0.338758633818391,-0.426823346360657,-0.0508499413237453,-0.0116704529007908,0.0818092897552621,0.0126530641377165,0.0411434532452322,0.0372961176326381,0.171029548057615,-0.0786692168482597,-0.0018155235234602,-0.0999742044519303,-0.178475418874547,-0.0899008759657532,0.0217598046549007,0.01236208911529,0.0713127854652661,0.0730592419497414,-0.0385113137806827,0.0125383774676748,-0.195063874570165,0.26454536499476,-0.31090657702013,-0.321614031775456,-0.266986544539485,-0.174771361303519,-0.244245023718885,-0.192225680975837,-0.309075676371781,-0.232238562073586,-0.280793557951616,-0.311595817948759,-0.278897769695937,-0.334749585737821,-0.380303349240202,-0.361898488743699,0.905741866172666,-0.366851025616291,-0.351234337172872,-0.357731762665454,0.334390950717393,-0.0681279379943497,0.0576897384936181,-0.0391420952426674,-0.10779043985084,0.451254469213628,0.501535088320536,0.532395248316435,0.637064353382613,0.481287907575052,0.389995798350915,0.402022076976329,0.568002628291132,0.560504954327943,0.663196292598895,-0.314728818943878,-0.166440553279075,-0.252080681572748,-0.0493993379424596,-0.069585295541098,0.0600093705849697,0.223015346498724,0.172940764557269,0.167397453998713,0.183044968900082,0.278399587236913,0.267916688149684,0.208868419849321,0.241960595701932,0.213839491892274,0.316107680742882,0.298053836586331,0.264082660485936,0.354699262799121,0.197028348419142,0.211651821356065,0.260850214486882,0.180823226463709,0.235263030920138,0.243146413641199,0.212209856317825,0.120192588774586,0.246270452059799,0.133085342801576,0.077706135026584,0.172487222464097,0.216750582381929,0.234162505396407,0.248571850020311,0.128378048900722,0.127425705047348,0.237473954014899,0.326751788520525,0.530664319954565,0.609400046271242,0.632113083375118
|coexpression_dpi_cluster_scores_median=-0.006737527783648,-0.103361675882535,0,0,0,0,0,-0.0536510276820826,-0.0354122849049144,0,-0.106719901441196,-0.0076048568702739,-0.205404365937974,-0.203055451348628,-0.20842087312342,-0.0295775797993255,-0.102949800595473,-0.120852969981978,-0.0725747805792908,-0.333286781718372,0.342666045921481,-0.0559942799231509,-0.232502892252562,-0.00696178657322627,0,-0.136218055402644,0,0,-0.00284449264928061,-0.0887399156180257,0,0,0,-0.333286781718372,0,0,0,-0.18144775748263,-0.333286781718372,-0.333286781718372,-0.333286781718372,-0.333286781718372,-0.333286781718372,-0.0588338682032687,0.0853510236404928,0.0255665908994283,0.409050573698022,0.377885658270285,0.464151699351225,0.373097696573221,0.152275885725811,0,0,-0.333286781718372,-0.110001783537818,0.180274689346406,0.109421078997306,0.180605254120548,0.201728379822244,0.0795051038908622,0.129334926615795,0.0971467028250622,0.325409323292782,-0.171933797753866,-0.0346811790612876,0,0.429661858307799,0.415724047761075,-0.123199070896024,-0.0152135276970178,-0.120839508477408,0.67334008360095,0.506327139467406,-0.0940011213133693,-0.0861082973215434,0,0.881986470255785,0.98192446025991,0.908157564375215,0.211505244059052,0.0741534036669881,0,0.99672821002206,0.78282103008584,0.861219367936097,0.376390156264641,0.51560191312802,0.305720327096196,-0.0525458499369185,-0.0705303310621867,0,0.31426200127384,0.42712057170383,0.507868328764517,0.41088371482122,0.6450083836396,0.514230974298541,-0.15393869493326,-0.333286781718372,-0.333286781718372,0,-0.333286781718372,-0.333286781718372,-0.333286781718372,0,0,0,0.312677171942677,0,0.159965940640837,0,0.206537407802916,0.137478318515856,0.204903871792348,0.131222718281153,0.194097829307416,0,0.388455310891187,0.10907085093946,0.369503040650664,0.61855055182011,0.294411220774837,-0.311320659391344,0.61635111773785,0.678522086701183,0,-0.199925020663882,-0.129193201985528,-0.193026853529067,0.748942167247644,0.335099584414834,0.145347469178033,0.741894412729528,0.55110273751474,0.753804127142235,0.418701027982207,0.0421182837367051,0.137740408373976,-0.0298982440554403,0.346863133693021,-0.28016205068926,-0.243416237105264,-0.145713500494491,-0.218872763780778,0.055406237837571,-0.0268811075590849,0.025185866104551,0.279967177171267,-0.248507525548747,-0.333286781718372,-0.149205104555427,-0.175409684343476,-0.141250814444049,0,0.0812688455295622,-0.254455186878464,-0.333286781718372,-0.152961356448184,0,0,0.0915002620172692,0,0.0506126378644987,0.193203797799034,0.116785086449131,0.295661284870165,0.45907778317601,0.358775719148858,0.517280700392248,0.554941365471057,0.783296146423517,0.770380097616896,0.703332341432885,0.677404331289864,0.393053673693912,0.0812786020093627,0,0,-0.0653755042006748,-0.242592652289678,-0.0540597769134425,0,-0.00861544286807703,0.0756292965920817,0,0.0551868404451916,-0.117509533948322,-0.0333912626067642,-0.190294423434027,0,0.0849828766602549,0.112670855563891,-0.0881020303604615,-0.106560324358613,-0.333286781718372,-0.0283103919119964,0,-0.00962814084704133,0.0754409701586123,0.112343641145276,0.118594524292246,0.095794817833365,0.402853802395083,-0.208231818022183,0.0770638680755428,-0.172001385725811,-0.12684401872361,-0.239453006656678,-0.23477254971238,0,0,-0.0723371368082459,0.0139143618697675,0,0.12131748200682,0.181687074536982,0.254464425648475,0.257182894266126,0.136564059910207,-0.137809392604892,-0.00271984812890769,-0.265195552368111,0,0.0672592169170953,0,0,0,0,0.120215008744062,0.0659019793256198,0.181287491017976,0.198271062479628,-0.19888586641119,-0.144666015672154,0,0.172879066927027,0.742896196713356,0.654787648214194,-0.0358305644349884,0.721759126606462,0.119093565942036,0.143151860801801,0.155593135195239,0,0,0,0,0.111348509539896,0,0.466560377831798,0.108524491213051,0.0711694759496908,0.0655375003561515,0.186486327624412,0,-0.16139621263535,0.010966776174977,-0.170802318591034,0,0,0,-0.0959774803525691,0,0,0,-0.215476806941585,0.0399486911878134,-0.261382289570012,-0.190873520371819,-0.178353619210112,-0.148022148120514,0.0273666750259993,0.174247988899791,0.239606249254481,0,-0.0667427021826386,0.0865478886078475,0.219989036254386,0.0650059127791652,0.091909893351283,-0.0432148180897101,-0.0395092030082176,0.111087966368681,0.86630452156764,-0.0650940416683672,-0.251800180648035,-0.141393430835797,-0.258335665960197,-0.228325873492685,-0.106343051516094,-0.10799980469537,-0.140216248236561,-0.277068210441316,0.291073584836546,-0.269515221647081,-0.028667592662787,0,0.0824580172145032,0,0.054943952156948,0.0448547931307977,0.182845846232878,0,0,0.194151474984939,-0.202139474905269,-0.00291265626503256,0,0,0.0677982110636083,0.0915665403705771,0,0,-0.0965600332248509,0.109925980570702,-0.214027222526265,-0.25312036561259,-0.183807838910314,0,-0.146590285437165,-0.0792887678460952,-0.162795714332556,-0.0931251679725784,-0.0761528320569405,-0.0688763307125124,-0.0304664431705847,-0.190324623970641,-0.191884872226249,-0.242058276862263,0.803335550308791,-0.0572977164658719,-0.1216331824589,-0.0686051498335823,0.405775959510878,-0.00570414566638872,0,-0.0234421724070593,0,0.450814369707626,0.453517235932598,0.517404685814234,0.581695040689136,0.374778587894724,0.399810008829701,0.307702443183822,0.530303524122715,0.570409181558021,0.613478370404309,-0.123042099433324,0,-0.333286781718372,-0.0382858718872057,0,0.073294297058821,0.0871588832444397,0.0545025186780301,0.0253478654720664,0.0674554888005131,0.273282837051135,0.180398977388577,0.138165606837579,0.210406483982511,0.109638387271474,0.29061047861444,0.230827425015583,0.235000511820921,0.261065738036311,0.108626159881932,0.128033729919821,0.18617177083446,0.164461680903316,0.157166310227119,0.17974762067668,0.126604887871452,0,0.12025904153321,0,0,0.0924644954689594,0.17392086126324,0.150465247179566,0.262628099022198,0.0766064454112358,0.175981558593572,0.124814910385777,0.269662033859093,0.314408101025714,0.474991293774629,0.483936573872345
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
}}
}}

Revision as of 13:20, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr14:52533620..52533687,-p2@Ndrg2
Mm9::chr15:74583461..74583464,-p2@Lynx1
Mm9::chr17:36034244..36034269,-p4@2310061I04Rik


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:2914&oldid=2152200"