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MCL coexpression mm9:2453: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000468!1.75e-11!333;UBERON:0000025!7.10e-11!114;UBERON:0005177!1.16e-10!79;UBERON:0004111!5.32e-10!122;UBERON:0009569!7.92e-10!66;UBERON:0003103!5.76e-08!43;UBERON:0007100!5.98e-08!18;UBERON:0000948!5.98e-08!18;UBERON:0005498!5.98e-08!18;UBERON:0004140!5.98e-08!18;UBERON:0009881!5.98e-08!18;UBERON:0004141!5.98e-08!18;UBERON:0003084!5.98e-08!18;UBERON:0007005!5.98e-08!18;UBERON:0004139!5.98e-08!18;UBERON:0004291!5.98e-08!18;UBERON:0000922!3.95e-07!320;UBERON:0005172!5.62e-07!49;UBERON:0005173!5.62e-07!49;UBERON:0002417!5.62e-07!49;UBERON:0000916!5.62e-07!49
}}
}}

Revision as of 18:29, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr6:97409256..97409272,-p8@Frmd4b
Mm9::chr6:97409273..97409297,-p6@Frmd4b
Mm9::chr6:97409303..97409314,-p13@Frmd4b
Mm9::chr9:32443818..32443854,+p2@Ets1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
multi-cellular organism1.75e-11333
tube7.10e-11114
trunk region element1.16e-1079
anatomical conduit5.32e-10122
subdivision of trunk7.92e-1066
compound organ5.76e-0843
primary circulatory organ5.98e-0818
heart5.98e-0818
primitive heart tube5.98e-0818
primary heart field5.98e-0818
anterior lateral plate mesoderm5.98e-0818
heart tube5.98e-0818
heart primordium5.98e-0818
cardiac mesoderm5.98e-0818
cardiogenic plate5.98e-0818
heart rudiment5.98e-0818
embryo3.95e-07320
abdomen element5.62e-0749
abdominal segment element5.62e-0749
abdominal segment of trunk5.62e-0749
abdomen5.62e-0749


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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