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|gostat_on_MCL_coexpression=GO:0000062;acyl-CoA binding;0.0198816939047207;74159!GO:0005504;fatty acid binding;0.0198816939047207;74159!
|gostat_on_MCL_coexpression=GO:0000062;acyl-CoA binding;0.0198816939047207;74159!GO:0005504;fatty acid binding;0.0198816939047207;74159!
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002365!5.81e-12!25;UBERON:0002330!5.81e-12!25;UBERON:0002107!2.01e-11!22;UBERON:0007499!2.01e-11!22;UBERON:0006925!2.01e-11!22;UBERON:0009497!2.01e-11!22;UBERON:0000015!2.01e-11!22;UBERON:0002423!2.01e-11!22;UBERON:0006235!2.01e-11!22;UBERON:0008835!2.01e-11!22;UBERON:0003894!2.01e-11!22;UBERON:0004161!2.01e-11!22;UBERON:0008836!2.01e-11!22;UBERON:0009854!8.84e-11!23;UBERON:0009856!8.84e-11!23;UBERON:0005172!5.66e-07!49;UBERON:0005173!5.66e-07!49;UBERON:0002417!5.66e-07!49;UBERON:0000916!5.66e-07!49
}}
}}

Revision as of 21:11, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:103859624..103859626,+p@chr10:103859624..103859626
+
Mm9::chr13:35085931..35085955,-p2@Eci2
Mm9::chr13:35118902..35118924,-p4@Eci2
Mm9::chr2:22924933..22924944,+p9@Acbd5
Mm9::chr2:22924961..22924975,+p3@Acbd5
Mm9::chr3:59835736..59835745,+p3@Aadac
Mm9::chr5:113566309..113566344,+p@chr5:113566309..113566344
+
Mm9::chr5:125946365..125946408,+p@chr5:125946365..125946408
+
Mm9::chr8:120197582..120197601,-p2@Sdr42e1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0000062acyl-CoA binding0.0198816939047207
GO:0005504fatty acid binding0.0198816939047207



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
exocrine gland5.81e-1225
exocrine system5.81e-1225
liver2.01e-1122
epithelial sac2.01e-1122
digestive gland2.01e-1122
epithelium of foregut-midgut junction2.01e-1122
anatomical boundary2.01e-1122
hepatobiliary system2.01e-1122
foregut-midgut junction2.01e-1122
hepatic diverticulum2.01e-1122
liver primordium2.01e-1122
septum transversum2.01e-1122
liver bud2.01e-1122
digestive tract diverticulum8.84e-1123
sac8.84e-1123
abdomen element5.66e-0749
abdominal segment element5.66e-0749
abdominal segment of trunk5.66e-0749
abdomen5.66e-0749


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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