FFCP PHASE1:Mm9::chr6:110595566..110595582,+: Difference between revisions
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|id=chr6:110595566..110595582,+ | |id=chr6:110595566..110595582,+ | ||
|ontology_enrichment_celltype=CL:0000117!1.16e-08!23;CL:0000337!1.16e-08!23;CL:0000540!3.61e-08!33;CL:0000047!3.61e-08!33;CL:0000031!3.61e-08!33;CL:0000404!3.61e-08!33 | |ontology_enrichment_celltype=CL:0000117!1.16e-08!23;CL:0000337!1.16e-08!23;CL:0000540!3.61e-08!33;CL:0000047!3.61e-08!33;CL:0000031!3.61e-08!33;CL:0000404!3.61e-08!33 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.56e-08,23;CL:0000337,1.56e-08,23;CL:0000540,3.86e-08,33;CL:0000047,3.86e-08,33;CL:0000031,3.86e-08,33;CL:0000404,3.86e-08,33 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!8.21e-22!71;UBERON:0003075!8.21e-22!71;UBERON:0007284!8.21e-22!71;UBERON:0000033!1.29e-20!63;UBERON:0001017!2.32e-20!73;UBERON:0005743!2.32e-20!73;UBERON:0000073!3.85e-20!75;UBERON:0001016!3.85e-20!75;UBERON:0004121!1.13e-19!102;UBERON:0000924!1.13e-19!102;UBERON:0006601!1.13e-19!102;UBERON:0003056!3.12e-19!49;UBERON:0001049!1.79e-18!52;UBERON:0005068!1.79e-18!52;UBERON:0006241!1.79e-18!52;UBERON:0007135!1.79e-18!52;UBERON:0000955!3.83e-17!50;UBERON:0006238!3.83e-17!50;UBERON:0002616!1.61e-16!49;UBERON:0003080!9.87e-15!40;UBERON:0002780!4.22e-14!39;UBERON:0001890!4.22e-14!39;UBERON:0006240!4.22e-14!39;UBERON:0002020!5.20e-14!34;UBERON:0002791!4.26e-11!29;UBERON:0003528!4.26e-11!29;UBERON:0001893!4.26e-11!29;UBERON:0000153!1.92e-09!94;UBERON:0007811!8.91e-09!86;UBERON:0002021!1.97e-08!10;UBERON:0000411!1.97e-08!10;UBERON:0001950!1.97e-08!10;UBERON:0000468!4.51e-08!333;UBERON:0002619!1.25e-07!17;UBERON:0000956!3.26e-07!21;UBERON:0001869!3.26e-07!21;UBERON:0000203!3.26e-07!21 | |ontology_enrichment_uberon=UBERON:0002346!8.21e-22!71;UBERON:0003075!8.21e-22!71;UBERON:0007284!8.21e-22!71;UBERON:0000033!1.29e-20!63;UBERON:0001017!2.32e-20!73;UBERON:0005743!2.32e-20!73;UBERON:0000073!3.85e-20!75;UBERON:0001016!3.85e-20!75;UBERON:0004121!1.13e-19!102;UBERON:0000924!1.13e-19!102;UBERON:0006601!1.13e-19!102;UBERON:0003056!3.12e-19!49;UBERON:0001049!1.79e-18!52;UBERON:0005068!1.79e-18!52;UBERON:0006241!1.79e-18!52;UBERON:0007135!1.79e-18!52;UBERON:0000955!3.83e-17!50;UBERON:0006238!3.83e-17!50;UBERON:0002616!1.61e-16!49;UBERON:0003080!9.87e-15!40;UBERON:0002780!4.22e-14!39;UBERON:0001890!4.22e-14!39;UBERON:0006240!4.22e-14!39;UBERON:0002020!5.20e-14!34;UBERON:0002791!4.26e-11!29;UBERON:0003528!4.26e-11!29;UBERON:0001893!4.26e-11!29;UBERON:0000153!1.92e-09!94;UBERON:0007811!8.91e-09!86;UBERON:0002021!1.97e-08!10;UBERON:0000411!1.97e-08!10;UBERON:0001950!1.97e-08!10;UBERON:0000468!4.51e-08!333;UBERON:0002619!1.25e-07!17;UBERON:0000956!3.26e-07!21;UBERON:0001869!3.26e-07!21;UBERON:0000203!3.26e-07!21 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.54e-23,64;UBERON:0003075,1.54e-23,64;UBERON:0007284,1.54e-23,64;UBERON:0001017,1.97e-21,73;UBERON:0001016,3.33e-21,75;UBERON:0004121,3.52e-20,95;UBERON:0000924,3.52e-20,95;UBERON:0006601,3.52e-20,95;UBERON:0000073,3.87e-20,54;UBERON:0003056,2.44e-19,49;UBERON:0001049,6.19e-19,52;UBERON:0005068,6.19e-19,52;UBERON:0006241,6.19e-19,52;UBERON:0007135,6.19e-19,52;UBERON:0010371,1.16e-18,73;UBERON:0000955,1.03e-15,47;UBERON:0006238,1.03e-15,47;UBERON:0002616,4.63e-15,46;UBERON:0003080,1.71e-14,40;UBERON:0010314,5.21e-14,92;UBERON:0002780,8.01e-14,39;UBERON:0001890,8.01e-14,39;UBERON:0006240,8.01e-14,39;UBERON:0002020,1.23e-13,34;UBERON:0003528,1.54e-10,29;UBERON:0002791,1.54e-10,29;UBERON:0001893,1.54e-10,29;UBERON:0002021,4.17e-09,10;UBERON:0000411,4.17e-09,10;UBERON:0001950,4.17e-09,10;UBERON:0002619,1.49e-07,17 | |||
|phase1_expression=2.40223270657191,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.6304112688837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.755380907853464,0.709638518536602,1.10128051297009,0,0,0.439372365468944,0.388859798148567,0,0,0,0,0,0.514518872071894,0,0,15.578367486189,20.6306481916093,20.9164363157039,2.03306719241479,0,0,0,0,2.09720077362883,2.30530983192933,0.622137673850866,0.675029691658453,1.26194976810829,27.7081454871689,37.3267834208227,3.55223317723367,1.72521847832825,2.75765635983006,28.6301290598411,32.8156458878932,25.9595041203051,17.672762555846,13.7231465403614,17.1901412283731,13.959149950069,34.3285192119325,29.1844653253707,58.6310885092599,45.2741944941147,33.5519002485541,1.74170244666323,1.36028808192214,0,0,0,0.539703191637817,0,0,1.96622188184453,0,0,0,3.94361575374705,0,0,0,0,0,0,0.79928715803342,0.258937883647172,2.3750742250372,2.60227990149204,0.608930956624282,1.84492397804847,1.05505848386836,2.23418543557839,0.879666139307728,0,0.289198713839823,0.884610551949874,0.485300549842228,0.441683036920787,0.484875253135222,3.72783522436244,12.5895742714965,9.84399522023239,0.255457055208591,0,0,0,50.1798642006156,83.26510971299,11.9371634507221,57.7096743038358,66.9974498205466,37.8174241098399,49.3213439725983,5.6011650117674,0.622034853050465,0.758168275301024,4.20883711772948,11.4505989807179,14.4838325793088,19.4467100189777,28.6339153887859,40.6177899933427,43.3024374562792,34.5759363625399,18.3679393224701,0.215567992932842,4.53854592402766,7.9178005873777,5.2606975782618,4.44875598760957,4.179025998266,2.88094990971121,4.97585667046233,0,0,0,1.03562886267751,1.40715635988658,1.80062061461015,1.42046841351126,0.590292695242212,0.771335564436891,0.930135779001631,0,0.583826711835847,0.493679549740441,0.492502392237286,0.324275238183423,0.584799949701329,1.3173006917463,1.20785776884335,44.7917590441591,15.8473103064098,0,0.528901133327089,2.13288250535234,3.71578674976702,4.12375876230699,3.22693639397348,3.55804870151792,2.09248188723815,0,0.658795818896044,1.50801125280162,0.994782360205754,1.55971269695296,1.79763881730844,0.864552199498777,0.796565093017469,2.27601481143698,8.91138398355885,14.6520056375005,7.73875045812194,5.43066964069352,4.55882829287071,8.60016904889899,1.77132177575523,4.70996183524124,2.46794327843601,0,0,0.196558995113203,0,0.202860121388503,0,0,0,0,0.274561413188081,0,0,0,0,0,0,0,2.4633883530163,0.977789858652155,0.169745085775188,0.234690248288502,0.335012514883631,0.238043640886014,0,0.315270288212382,0,0,0.163863314715738,0.172684981865896,0,0,0,0,0,40.4587486769236,25.3177243039159,0,0,1.89304931649754,1.56175497718655,1.29254038639679,2.15071918157297,2.45078541490634,1.69845918473299,3.64329631507405,1.75353514746787,4.74345333535828,44.6636629826312,11.4971469018698,9.43747699436453,12.2165219515182,5.60898418106621,0,4.37005145078967,5.13950046840077,0.377210159511796,0,1.53717573971964,0.516856586336442,0.363533729477506,0.356497378384721,0.948110273807448,0,0,2.04263763452273,8.46287141947158,5.43306471887569,9.85950361145325,13.6551979904551,8.20496560969525,7.0756078858912,3.34911444026059,0.23467170806371,0,1.7642271844397,0.16488625294148,0.161464426695906,0.422190474497091,0.358117032009409,0.164140899745061,0,36.1579338920494,0,27.2430665711454,9.25972636848558,0,0,0,0,0,0,1.90934123603023,2.05618395827738,10.9792512248498,4.53622431451565,5.01811910434725,2.83871332870031,2.56242258131159,2.23164330458407,1.30877970992015,1.03691978633434,0.621339313086926,0,0,0.992750942742586,2.72231663681667,1.93739735216597,1.01373675294467,1.05621514781179,2.0832701575032,0.943734099831398,2.17425708743405,1.44015003128933,0,3.85177909051312,1.84879722896689,0.51968329191118,0,0.198681354781265,0.120195449519969,0,0.100966449948148,0,0,0,0,0,0,0,0,0,0.772758376128762,2.62755465631655,6.59345847362154,1.2862102744744,2.50786052017682,123.680653533138,113.240008180766,111.714625120682,76.990225689972,111.668450722615,104.999751737168,110.028667537784,76.1042833448933,90.6284817968409,100.445500479853,0.103787347584177,3.19219898720825,8.19521307619844,7.29320151204882,3.14419743941973,2.20612210140017,5.33392146723877,10.9198580336614,6.09746498224449,7.07552192938633,11.4065684950608,8.48818536237343,5.80577346313271,7.68301828858431,7.63891737109657,6.66811167796303,9.27074607558844,7.7163688185482,10.714233420886,10.3039244094078,8.9146005620208,6.03417740941747,5.96090474868302,8.72078499793971,7.81107857447244,7.36147088657586,9.14639864363863,5.78753365163254,6.92600980613895,8.41713407486608,7.71127617807132,8.86540341380071,7.7753898202241,8.2116525828562,5.98010494041538,10.9916654292696,8.18760629558929,4.51229213501426,3.82576664137687,1.98532277207564,2.55054619182464 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| ||
|short_description=p1@Grm7 | |short_description=p1@Grm7 | ||
}} | }} |
Revision as of 12:21, 14 November 2012
Short description: | p1@Grm7 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Grm7_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | 0bp_to_ENSMUST00000071076, ENSMUST00000172951, ENSMUST00000174018_5end |
EntrezGene: | Grm7 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.56e-08 | 23 |
neuroblast (sensu Vertebrata) | 1.56e-08 | 23 |
neuron | 3.86e-08 | 33 |
neuronal stem cell | 3.86e-08 | 33 |
neuroblast | 3.86e-08 | 33 |
electrically signaling cell | 3.86e-08 | 33 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 1.54e-23 | 64 |
neural plate | 1.54e-23 | 64 |
presumptive neural plate | 1.54e-23 | 64 |
central nervous system | 1.97e-21 | 73 |
nervous system | 3.33e-21 | 75 |
ectoderm-derived structure | 3.52e-20 | 95 |
ectoderm | 3.52e-20 | 95 |
presumptive ectoderm | 3.52e-20 | 95 |
regional part of nervous system | 3.87e-20 | 54 |
pre-chordal neural plate | 2.44e-19 | 49 |
neural tube | 6.19e-19 | 52 |
neural rod | 6.19e-19 | 52 |
future spinal cord | 6.19e-19 | 52 |
neural keel | 6.19e-19 | 52 |
ecto-epithelium | 1.16e-18 | 73 |
brain | 1.03e-15 | 47 |
future brain | 1.03e-15 | 47 |
regional part of brain | 4.63e-15 | 46 |
anterior neural tube | 1.71e-14 | 40 |
structure with developmental contribution from neural crest | 5.21e-14 | 92 |
regional part of forebrain | 8.01e-14 | 39 |
forebrain | 8.01e-14 | 39 |
future forebrain | 8.01e-14 | 39 |
gray matter | 1.23e-13 | 34 |
brain grey matter | 1.54e-10 | 29 |
regional part of telencephalon | 1.54e-10 | 29 |
telencephalon | 1.54e-10 | 29 |
occipital lobe | 4.17e-09 | 10 |
visual cortex | 4.17e-09 | 10 |
neocortex | 4.17e-09 | 10 |
regional part of cerebral cortex | 1.49e-07 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.