FFCP PHASE1:Hg19::chr4:55095379..55095390,+: Difference between revisions
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|ontology_enrichment_celltype=CL:0000055!4.43e-27!180;CL:0000057!3.12e-23!75;CL:0002620!3.18e-11!23;CL:0002494!9.77e-09!16;CL:0000187!1.45e-08!54;CL:0000680!2.63e-08!57;CL:0000056!2.63e-08!57;CL:0000355!2.63e-08!57;CL:0000183!1.04e-07!59;CL:0000393!1.97e-07!60;CL:0000211!1.97e-07!60 | |ontology_enrichment_celltype=CL:0000055!4.43e-27!180;CL:0000057!3.12e-23!75;CL:0002620!3.18e-11!23;CL:0002494!9.77e-09!16;CL:0000187!1.45e-08!54;CL:0000680!2.63e-08!57;CL:0000056!2.63e-08!57;CL:0000355!2.63e-08!57;CL:0000183!1.04e-07!59;CL:0000393!1.97e-07!60;CL:0000211!1.97e-07!60 | ||
|ontology_enrichment_celltype_v019=CL:0002620;2.13e-12;23!CL:0002494;2.18e-09;16!CL:0000057;5.47e-09;73!CL:0002320;2.47e-07;188!CL:0000048;4.41e-07;58!CL:0000723;6.24e-07;61 | |ontology_enrichment_celltype_v019=CL:0002620;2.13e-12;23!CL:0002494;2.18e-09;16!CL:0000057;5.47e-09;73!CL:0002320;2.47e-07;188!CL:0000048;4.41e-07;58!CL:0000723;6.24e-07;61 | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.36e-24,76;CL:0002620,1.82e-12,23;CL:0000048,9.27e-10,427;CL:0002494,1.83e-09,16;CL:0000723,3.25e-09,433;CL:0000034,1.61e-08,441;CL:0002320,1.08e-07,361 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2=DOID:17,7.78e-07,5;DOID:450,7.78e-07,5;DOID:66,7.78e-07,5;DOID:423,7.78e-07,5;DOID:0080000,7.78e-07,5;DOID:11722,7.78e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!7.36e-14!83;UBERON:0002329!7.36e-14!83;UBERON:0003077!7.36e-14!83;UBERON:0003059!7.36e-14!83;UBERON:0007282!7.36e-14!83;UBERON:0009618!7.36e-14!83;UBERON:0007285!7.36e-14!83;UBERON:0007100!1.05e-12!27;UBERON:0000948!1.20e-12!24;UBERON:0005498!1.20e-12!24;UBERON:0004140!1.20e-12!24;UBERON:0009881!1.20e-12!24;UBERON:0004141!1.20e-12!24;UBERON:0003084!1.20e-12!24;UBERON:0007005!1.20e-12!24;UBERON:0004139!1.20e-12!24;UBERON:0004291!1.20e-12!24;UBERON:0000475!2.41e-11!365;UBERON:0004290!3.21e-11!70;UBERON:0003102!1.00e-09!95;UBERON:0002385!1.40e-09!63;UBERON:0001015!1.40e-09!63;UBERON:0000383!1.40e-09!63;UBERON:0001134!2.23e-09!61;UBERON:0002036!2.23e-09!61;UBERON:0003082!2.23e-09!61;UBERON:0007023!2.28e-09!115;UBERON:0000481!2.72e-09!347;UBERON:0000468!2.78e-09!659;UBERON:0000486!4.46e-09!82;UBERON:0004872!1.41e-07!84;UBERON:0002199!2.32e-07!45;UBERON:0002416!2.32e-07!45;UBERON:0002097!4.36e-07!40;UBERON:0005256!4.52e-07!143;UBERON:0000477!5.69e-07!286 | |ontology_enrichment_uberon=UBERON:0000914!7.36e-14!83;UBERON:0002329!7.36e-14!83;UBERON:0003077!7.36e-14!83;UBERON:0003059!7.36e-14!83;UBERON:0007282!7.36e-14!83;UBERON:0009618!7.36e-14!83;UBERON:0007285!7.36e-14!83;UBERON:0007100!1.05e-12!27;UBERON:0000948!1.20e-12!24;UBERON:0005498!1.20e-12!24;UBERON:0004140!1.20e-12!24;UBERON:0009881!1.20e-12!24;UBERON:0004141!1.20e-12!24;UBERON:0003084!1.20e-12!24;UBERON:0007005!1.20e-12!24;UBERON:0004139!1.20e-12!24;UBERON:0004291!1.20e-12!24;UBERON:0000475!2.41e-11!365;UBERON:0004290!3.21e-11!70;UBERON:0003102!1.00e-09!95;UBERON:0002385!1.40e-09!63;UBERON:0001015!1.40e-09!63;UBERON:0000383!1.40e-09!63;UBERON:0001134!2.23e-09!61;UBERON:0002036!2.23e-09!61;UBERON:0003082!2.23e-09!61;UBERON:0007023!2.28e-09!115;UBERON:0000481!2.72e-09!347;UBERON:0000468!2.78e-09!659;UBERON:0000486!4.46e-09!82;UBERON:0004872!1.41e-07!84;UBERON:0002199!2.32e-07!45;UBERON:0002416!2.32e-07!45;UBERON:0002097!4.36e-07!40;UBERON:0005256!4.52e-07!143;UBERON:0000477!5.69e-07!286 | ||
|ontology_enrichment_uberon_v019=UBERON:0000948;7.39e-13;22!UBERON:0007100;5.83e-12;25!UBERON:0002384;5.48e-08;198!UBERON:0002097;7.13e-07;41 | |ontology_enrichment_uberon_v019=UBERON:0000948;7.39e-13;22!UBERON:0007100;5.83e-12;25!UBERON:0002384;5.48e-08;198!UBERON:0002097;7.13e-07;41 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000948,2.40e-14,24;UBERON:0005498,2.40e-14,24;UBERON:0004140,2.40e-14,24;UBERON:0009881,2.40e-14,24;UBERON:0004141,2.40e-14,24;UBERON:0003084,2.40e-14,24;UBERON:0007005,2.40e-14,24;UBERON:0004139,2.40e-14,24;UBERON:0004291,2.40e-14,24;UBERON:0007100,2.44e-13,27;UBERON:0002097,4.14e-09,41;UBERON:0004797,8.74e-09,7;UBERON:0002199,3.95e-08,46;UBERON:0002416,3.95e-08,46;UBERON:0004872,4.64e-08,83;UBERON:0003102,5.18e-08,99;UBERON:0002384,1.09e-07,371;UBERON:0004923,3.19e-07,66 | |||
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| ||
|short_description=p6@PDGFRA | |short_description=p6@PDGFRA | ||
}} | }} |
Revision as of 03:55, 21 November 2012
Short description: | p6@PDGFRA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_PDGFRA_5end |
Coexpression cluster: | C1941_Fibroblast_Nucleus_Mesenchymal_tenocyte_Anulus_Smooth_acute |
Association with transcript: | -56bp_to_ENST00000508170_5end |
EntrezGene: | PDGFRA |
HGNC: | 8803 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.36e-24 | 76 |
skin fibroblast | 1.82e-12 | 23 |
multi fate stem cell | 9.27e-10 | 427 |
cardiocyte | 1.83e-09 | 16 |
somatic stem cell | 3.25e-09 | 433 |
stem cell | 1.61e-08 | 441 |
connective tissue cell | 1.08e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
heart | 2.40e-14 | 24 |
primitive heart tube | 2.40e-14 | 24 |
primary heart field | 2.40e-14 | 24 |
anterior lateral plate mesoderm | 2.40e-14 | 24 |
heart tube | 2.40e-14 | 24 |
heart primordium | 2.40e-14 | 24 |
cardiac mesoderm | 2.40e-14 | 24 |
cardiogenic plate | 2.40e-14 | 24 |
heart rudiment | 2.40e-14 | 24 |
primary circulatory organ | 2.44e-13 | 27 |
skin of body | 4.14e-09 | 41 |
blood vessel layer | 8.74e-09 | 7 |
integument | 3.95e-08 | 46 |
integumental system | 3.95e-08 | 46 |
splanchnic layer of lateral plate mesoderm | 4.64e-08 | 83 |
surface structure | 5.18e-08 | 99 |
connective tissue | 1.09e-07 | 371 |
organ component layer | 3.19e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 7.78e-07 | 5 |
myotonic disease | 7.78e-07 | 5 |
muscle tissue disease | 7.78e-07 | 5 |
myopathy | 7.78e-07 | 5 |
muscular disease | 7.78e-07 | 5 |
myotonic dystrophy | 7.78e-07 | 5 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.