UBERON:0001828: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:FMA_59762-MA_0000342 | ||
|anatomical_img_id=FMA:59762 | |||
| | |||
|comment=AO notes: FMA has gingiva of upper and lower jaw | |comment=AO notes: FMA has gingiva of upper and lower jaw | ||
|created_by= | |created_by= | ||
| | |def="The gingiva, or gums, consists of the mucosal tissue that lies over the alveolar bone. [WP,unvetted]." [Wikipedia:Gingiva] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0001828 | |||
|is_a=UBERON:0000479;;UBERON:0004119;;UBERON:0004121 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=gingiva | |||
|namespace= | |||
|obo_creation_date= | |||
|part_of=UBERON:0000166;;UBERON:0003729 | |part_of=UBERON:0000166;;UBERON:0003729 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset=uberon_slim | ||
| | |synonym="gum" EXACT [FMA:59762];;"gum tissue" EXACT [UBERON:cjm] | ||
|union_of= | |||
|xref=BTO:0000519;;EFO:0001925;;EMAPA:18967;;EMAPA:18970;;EV:0100064;;FMA:59762;;GAID:1257;;galen:Gingiva;;http://upload.wikimedia.org/wikipedia/commons/2/2e/Tooth_Section.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/2/2e/Tooth_Section.svg/200px-Tooth_Section.svg.png;;MA:0000342;;MESH:A.14.254.646.480;;ncithesaurus:Gingiva;;OpenCyc:Mx4rvViWnZwpEbGdrcN5Y29ycA;;SCTID:181224006;;VHOG:0001269 | |||
}} | }} | ||
Revision as of 18:39, 29 November 2012
| Name: | gingiva | |
|---|---|---|
| Definition: | "The gingiva, or gums, consists of the mucosal tissue that lies over the alveolar bone. [WP,unvetted]." [Wikipedia:Gingiva] | |
| Xrefs: |
| |
| Synonyms: |
"gum" EXACT [FMA:59762] "gum tissue" EXACT [UBERON:cjm] | |
| Comments: | AO notes: FMA has gingiva of upper and lower jaw | |
| Alt_id: | UBERON:FMA_59762-MA_0000342 | |
| Subset: | uberon_slim |
200px-Tooth_Section.svg.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000479(tissue),UBERON:0004119(endoderm-derived structure),UBERON:0004121(ectoderm-derived structure) |
|---|---|
| part_of: | UBERON:0000166(oral opening),UBERON:0003729(mouth mucosa) |
Children
| part of: | UBERON:0001949 (gingival epithelium),CL:0002552 (fibroblast of gingiva) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11221-116B6 (Gingival epithelial cells, donor1 (GEA11))
- 11222-116B7 (Fibroblast - Gingival, donor4 (GFH2))
- 11237-116D4 (Fibroblast - Gingival, donor1)
- 11302-117B6 (Gingival epithelial cells, donor2 (GEA14))
- 11303-117B7 (Fibroblast - Gingival, donor5 (GFH3))
- 11318-117D4 (Fibroblast - Gingival, donor2)
- 11379-118B2 (Gingival epithelial cells, donor3 (GEA15))
- 11394-118C8 (Fibroblast - Gingival, donor3)
- 11921-125H4 (Fibroblast - Gingival, donor6 (aggressive periodontitis))
- 11922-125H5 (Fibroblast - Gingival, donor6 (control))
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001828 (gingiva), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
