Template:Macroape 1083: Difference between revisions
From FANTOM5_SSTAR
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<style type="text/css" title="currentStyle"> | <style type="text/css" title="currentStyle"> | ||
@import "/resource_browser/rb_js/datatables/media/css/jquery.dataTables.css"; | @import "/resource_browser/rb_js/datatables/media/css/jquery.dataTables.css"; | ||
.rotate90 { | |||
-webkit-transform: rotate(-90deg); | |||
-moz-transform: rotate(-90deg); | |||
-webkit-transform-origin: 6px 18px; | |||
-moz-transform-origin: 6px 18px; | |||
} | |||
.rotate90_2 { | |||
-webkit-transform: rotate(-90deg); | |||
-moz-transform: rotate(-90deg); | |||
-webkit-transform-origin: 10px 20px; | |||
-moz-transform-origin: 10px 20px; | |||
} | |||
</style> | </style> | ||
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.min.js"></script> | <script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.min.js"></script> | ||
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'''Full Name:''' [[name::{{{name}}}]] | '''Full Name:''' [[name::{{{name}}}]] | ||
<html><img src="/resource_browser/seqlogos/macroape_1083/</html>{{#replace:{{{ | <html><img src="/resource_browser/seqlogos/macroape_1083/</html>{{#replace:{{#replace:{{PAGENAMEE}}|/|_}}|:|_}}<html>.png" width=500> </html> | ||
{| class="wikitable mw-collapsible mw-collapsed" style="width:500px" | {| class="wikitable mw-collapsible mw-collapsed" style="width:500px" | ||
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|} | |} | ||
== | == Sample specificity == | ||
{{#info:The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon}} | {{#info:The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon}} | ||
<html> | <html> | ||
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"aoColumns": [{ "sTitle": "FF samples", "bSortable": false, "fnRender": function(obj) { | "aoColumns": [{ "sTitle": "FF samples", "bSortable": false, "fnRender": function(obj) { | ||
return sReturn = '<a href="/resource_browser/index.php/FF:'+obj.aData[ obj.iDataColumn ].split('.').pop()+'">'+decodeURIComponent(obj.aData[ obj.iDataColumn ])+'</a>'; | return sReturn = '<a href="/resource_browser/index.php/FF:'+obj.aData[ obj.iDataColumn ].split('.').pop()+'">'+decodeURIComponent(obj.aData[ obj.iDataColumn ])+'</a>'; | ||
} },{ "sTitle": "p-value", "sWidth": "50pt" }], | } },{ "sTitle": "p-value", "sType": "numeric", "sWidth": "50pt" }], | ||
"aaSorting": [[ 1, "asc" ]], | "aaSorting": [[ 1, "asc" ]], | ||
}); | }); | ||
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<table id="tfbs_overexpression_table"></table> | <table id="tfbs_overexpression_table"></table> | ||
</html> | </html> | ||
== TomTom analysis == | |||
{{#info: <br>Analyst: Michiel de Hoon and Hiroko Ohmiya}} | |||
{{#if: {{#pos:{{{tomtom_result}}}|;}} | | |||
<html> | |||
<script type="text/javascript"> | |||
$(document).ready(function() { | |||
$('#tomtom_results').dataTable({ | |||
"sScrollY": "300px", | |||
"bPaginate": false, | |||
"bScrollCollapse": true, | |||
"iDisplayLength": -1, | |||
"aaSorting": [[2,'asc']], | |||
"aoColumnDefs": [{"fnRender": function ( o, val ) {var elem = o.aData[0].split("#"); return "<a href=\"http://jaspar.genereg.net/cgi-bin/jaspar_db.pl?ID="+elem[1]+"&rm=present&collection=CORE\">"+elem[0]+"</a>";}, "aTargets": [ 0 ]}, { "sWidth": "150px", "sType": "numeric", "aTargets": [2,3,4] }] | |||
}); | |||
$('#tomtom_results_wrapper .dataTables_scrollHeadInner tr').css("height", "100px").css("vertical-align", "bottom").css("text-align","left"); | |||
}); | |||
</script> | |||
</html> | |||
<table id="tomtom_results"><html><thead></html> | |||
<tr><th><div class="rotate90"><p>Target_ID</p></div></th><th><div class="rotate90"><p style="width:1px;">Optimal_offset</p></div></th><th><div class="rotate90"><p>p-value</p></div></th><th><div class="rotate90"><p>E-value</p></div></th><th><div class="rotate90"><p>q-value</p></div></th><th><div class="rotate90"><p style="width:1px;">Overlap</p></div></th><th><div class="rotate90_2">Query<br>consensus</div></th><th ><div class="rotate90_2">Target<br>consensus</div></th><th><div class="rotate90"><p style="width:1px;">Orientation</p></div></th></tr><html></thead><tbody></html> | |||
{{#arraymap:{{{tomtom_result}}}|!|$ | |||
|<tr><td>{{#replace:$|;|</td><td>}}</td></tr> | |||
|}} | |||
<html></tbody></html></table> | |||
|No results for this motif | |||
}} | |||
<!-- | |||
{{#arraymap:{{{macroape_1083_sample_pvalues}}}|!|$ | |||
|{{#set:Macroape_1083_sample_pvalue=$}} | |||
}} | |||
--> | |||
[[Category:MacroAPE_1083]] | |||
Latest revision as of 10:20, 22 January 2013
Full Name: {{{name}}}
| Motif matrix | |
|---|---|
|
Sample specificity
The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon
TomTom analysis
<br>Analyst: Michiel de Hoon and Hiroko Ohmiya
No results for this motif
