NonredundantMotifs:50: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{Known_motif
|entrez_gene_id=
|motif_cluster_2013_march_motif_members= /SWISSREGULON:MEF2{A,B,C,D}.p2~HOX{A4,D4}.p2 /HOMER:MEF2A_HL1-Mef2a.biotin-ChIP-Seq/ /JASPAR:MA005...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{Known_motif | {{Known_motif | ||
|entrez_gene_id= | |entrez_gene_id= | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:MEF2 | |motif_cluster_2013_march_motif_members= /SWISSREGULON:MEF2(A,B,C,D).p2~HOX(A4,D4).p2 /HOMER:MEF2A_HL1-Mef2a.biotin-ChIP-Seq/ /JASPAR:MA0052.1;MEF2A /HOCOMOCO:MEF2A_f1~MEF2C_f1~MEF2D_f1 | ||
|name=known50 | |name=known50 | ||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
|representative_motif_id=HOX | |representative_motif_id=HOX(A4,D4).p2 | ||
|representative_motif_name= | |representative_motif_name= | ||
|score=0.18028113807999635 | |score=0.18028113807999635 | ||
Revision as of 16:17, 1 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known50
- db :SWISSREGULON
- Id :HOX(A4,D4).p2
- name :
- score :0.18028113807999635
- External refs:
- Internal refs:
| Motif matrix | |
|---|---|
|
Sub Motif Members
