NonredundantMotifs:8: Difference between revisions
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{{Known_motif | {{Known_motif | ||
|entrez_gene_id= | |entrez_gene_id= | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:CRX.p2~PITX1..3.p2 /HOMER:CRX_Retina-Crx-ChIP-Seq | |motif_cluster_2013_march_motif_members= /HOCOMOCO:PRRX1_f1~OTX1_f1~PITX2_si~OTX2_si~CRX_si /SWISSREGULON:CRX.p2~PITX1..3.p2 /HOMER:CRX_Retina-Crx-ChIP-Seq /UNIPROBE:Obox1_3970.2;CELL08~Tcf1_secondary;SCI09~Crx_3485.1;CELL08~Pitx1_2312.1;CELL08~Otx2_3441.1;CELL08~Pitx2_2274.3;CELL08~Otx1_2325.1;CELL08~Pitx3_3497.2;CELL08~Obox6_3440.2;CELL08~Obox2_3438.2;CELL08~Obox3_3439.1;CELL08~Obox5_3963.2;CELL08~Obox5_2284.1;CELL08~Dmbx1_2277.1;CELL08~Gsc_2327.3;CELL08~Dobox5_3493.1;CELL08 | ||
|name=known8 | |name=known8 | ||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
Revision as of 16:20, 1 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known8
- db :SWISSREGULON
- Id :PITX1..3.p2
- name :
- score :0.3171283104135989
- External refs:
- Internal refs:
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Sub Motif Members
