NonredundantMotifs:38: Difference between revisions
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|entrez_gene_id=2099
|motif_cluster_2013_march_motif_members= /SWISSREGULON:PPARG.p2~ESR1.p3 /HOMER:ESR1_MCF7-ERa-ChIP-Seq~NR1D1_BLRP(RAW)-Reverba-ChIP-Seq ...") |
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{{Known_motif | {{Known_motif | ||
|entrez_gene_id=2099 | |entrez_gene_id=2099 | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:PPARG.p2~ESR1.p3 /HOMER:ESR1_MCF7-ERa-ChIP-Seq~NR1D1_BLRP(RAW)-Reverba-ChIP- | |motif_cluster_2013_march_motif_members= /JASPAR:MA0258.1;ESR2~MA0112.2;ESR1~MA0066.1;PPARG /HOCOMOCO:ESR2_do~ESR1_do /SWISSREGULON:PPARG.p2~ESR1.p3 /HOMER:ESR1_MCF7-ERa-ChIP-Seq~NR1D1_BLRP(RAW)-Reverba-ChIP-Seq | ||
|name=known38 | |name=known38 | ||
|representative_motif_db=JASPAR | |representative_motif_db=JASPAR | ||
Revision as of 16:20, 1 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known38
- db :JASPAR
- Id :MA0112.2
- name :ESR1
- score :0.6553463632180748
- External refs:
- Internal refs:
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Sub Motif Members
