NonredundantMotifs:25: Difference between revisions
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{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1;3.2080645161290273;4.1951612903225675;4.304838709677403;4.304838709677403!2;0.0;0.0;0.0;16.0129032258064!3;0.0;1.0967741935483835;14.91612903225801;0.0!4;16.0129032258064;0.0;0.0;0.0!5;0.0;16.0129032258064;0.0;0.0!6;16.0129032258064;0.0;0.0;0.0!7;3.2080645161290273;2.220967741935472;9.34999999999997;1.2338709677419308 | |||
|entrez_gene_id=7050 | |entrez_gene_id=7050 | ||
|motif_cluster_2013_march_motif_members= | |motif_cluster_2013_march_motif_members= /SWISSREGULON:TGIF1.p2~HOXA9_MEIS1.p2 /HOMER:TBX20_Heart-Tbx20-ChIP-Seq(GSE29636) /UNIPROBE:Tgif1_2342.2;CELL08~Pknox2_3077.2;CELL08~Tgif2_3451.1;CELL08~Meis1_2335.1;CELL08~Pknox1_2364.2;CELL08~Mrg2_2302.1;CELL08~Mrg1_2246.2;CELL08 /HOCOMOCO:MEIS1_f2~MEIS2_do~HXA9_f1~TGIF1_si | ||
|name=known25 | |name=known25 | ||
|representative_motif_db=HOCOMOCO | |representative_motif_db=HOCOMOCO | ||
Revision as of 10:45, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known25
- db :HOCOMOCO
- Id :TGIF1_si
- name :
- score :0.2503789537870696
- External refs:
- Internal refs:
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Sub Motif Members
