NonredundantMotifs:76: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1;0.544797687861271;4.302023121387277;6.556358381502891;1.596820809248561!2;0.0;7.815028901734106;2.630057803468212;2.554913294797682!3;2.2543352601156013;10.369942196531788;0.0;0.3757225433526006!4;3.419075144508673;0.1878612716763003;2.442196531791913;6.950867052023115!5;0.0;0.7514450867052025;11.196531791907514;1.0520231213872835!6;5.786127167630056;3.6820809248554887;2.479768786127165;1.0520231213872835!7;4.132947976878617;3.531791907514455;2.404624277456648;2.930635838150293!8;3.1560693641618442;6.537572254335265;0.3757225433526006;2.930635838150293!9;4.283236994219651;0.3757225433526006;3.1560693641618442;5.184971098265894!10;2.141618497109832;3.193641618497109;6.124277456647402;1.54046242774567!11;5.823699421965321;0.1878612716763003;6.800578034682081;0.1878612716763003!12;0.0;10.820809248554903;2.179190751445084;0.0!13;2.2543352601156013;9.317919075144511;0.0;1.427745664739888!14;5.898843930635838;0.1878612716763003;4.621387283236997;2.291907514450866!15;0.0;0.0;13.0;0.0!16;9.543352601156062;1.427745664739888;0.6763005780346816;1.352601156069358 | |||
|entrez_gene_id=7024 | |entrez_gene_id=7024 | ||
|motif_cluster_2013_march_motif_members= /JASPAR:MA0145.1;Tcfcp2l1 | |motif_cluster_2013_march_motif_members= /SWISSREGULON:TFCP2.p2 /JASPAR:MA0145.1;Tcfcp2l1 /HOMER:TFCP2L1_mES-Tfcp2l1-ChIP-Seq /HOCOMOCO:TFCP2_f1 | ||
|name=known76 | |name=known76 | ||
|representative_motif_db=HOCOMOCO | |representative_motif_db=HOCOMOCO | ||
Revision as of 10:47, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known76
- db :HOCOMOCO
- Id :TFCP2_f1
- name :
- score :2.029934955688791
- External refs:
- Internal refs:
| Motif matrix | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sub Motif Members
