Personal tools

NonredundantMotifs:3: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 2: Line 2:
|PWM=P0;A;C;G;T!1;0.0;0.0;7.030303030303032;0.969696969696968!2;0.0;1.939393939393936;4.0;2.060606060606064!3;0.0;2.060606060606064;3.030303030303032;2.909090909090912!4;0.0;2.060606060606064;4.969696969696968;0.969696969696968!5;1.090909090909088;0.0;6.909090909090912;0.0!6;0.0;6.909090909090912;0.0;1.090909090909088!7;4.0;0.0;0.969696969696968;3.030303030303032!8;0.0;7.030303030303032;0.969696969696968;0.0!9;0.0;0.969696969696968;7.030303030303032;0.0!10;0.0;0.969696969696968;0.0;7.030303030303032!11;0.0;0.0;8.0;0.0!12;0.969696969696968;1.939393939393936;5.090909090909088;0.0!13;0.969696969696968;5.939393939393936;1.090909090909088;0.0!14;2.909090909090912;2.060606060606064;0.969696969696968;2.060606060606064!15;0.0;2.060606060606064;0.969696969696968;4.969696969696968!16;0.0;2.060606060606064;2.909090909090912;3.030303030303032!17;2.939393939393936;2.090909090909088;1.969696969696968;1.0
|PWM=P0;A;C;G;T!1;0.0;0.0;7.030303030303032;0.969696969696968!2;0.0;1.939393939393936;4.0;2.060606060606064!3;0.0;2.060606060606064;3.030303030303032;2.909090909090912!4;0.0;2.060606060606064;4.969696969696968;0.969696969696968!5;1.090909090909088;0.0;6.909090909090912;0.0!6;0.0;6.909090909090912;0.0;1.090909090909088!7;4.0;0.0;0.969696969696968;3.030303030303032!8;0.0;7.030303030303032;0.969696969696968;0.0!9;0.0;0.969696969696968;7.030303030303032;0.0!10;0.0;0.969696969696968;0.0;7.030303030303032!11;0.0;0.0;8.0;0.0!12;0.969696969696968;1.939393939393936;5.090909090909088;0.0!13;0.969696969696968;5.939393939393936;1.090909090909088;0.0!14;2.909090909090912;2.060606060606064;0.969696969696968;2.060606060606064!15;0.0;2.060606060606064;0.969696969696968;4.969696969696968!16;0.0;2.060606060606064;2.909090909090912;3.030303030303032!17;2.939393939393936;2.090909090909088;1.969696969696968;1.0
|entrez_gene_id=23493
|entrez_gene_id=23493
|motif_cluster_2013_march_motif_members= /SWISSREGULON:AHR_ARNT_ARNT2.p2~HIF1A.p2~ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2~SREBF1,2.p2~bHLH_family.p2~HES1.p2~TFEB.p2 /JASPAR:MA0259.1;HIF1A::ARNT~MA0147.1;Myc~MA0093.1;USF1~MA0058.1;MAX~MA0059.1;MYC::MAX~MA0104.2;Mycn~MA0004.1;Arnt~MA0006.1;Arnt::Ahr /HOMER:ATF3_K562-ATF3-ChIP-Seq~MYCN_mES-nMyc-ChIP-Seq~MAX_K562-Max-ChIP-Seq~USF1_GM12878-Usf1-ChIP-Seq~MYC_LNCAP-cMyc-ChIP-Seq~BHLHE40_HepG2-BHLHE40-ChIP-Seq~HIF1A_MCF7-HIF1a-ChIP-Seq~MYC_mES-cMyc-ChIP-Seq /UNIPROBE:Bhlhb2_primary;SCI09~Max_primary;SCI09~Max_secondary;SCI09~Bhlhb2_secondary;SCI09 /HOCOMOCO:TFE3_f1~TFEB_f1~BHE40_f2~BMAL1_f1~AHR_si~MYCN_si~MITF_f1~MYC_f1~ARNT_f1~HES1_f1~USF1_f1~HEY2_f1~HIF1A_si~MAX_f1~USF2_f1~ENOA_si
|motif_cluster_2013_march_motif_members= /JASPAR:MA0259.1;HIF1A::ARNT~MA0147.1;Myc~MA0093.1;USF1~MA0058.1;MAX~MA0059.1;MYC::MAX~MA0104.2;Mycn~MA0004.1;Arnt~MA0006.1;Arnt::Ahr /SWISSREGULON:AHR_ARNT_ARNT2.p2~HIF1A.p2~ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2~SREBF1,2.p2~bHLH_family.p2~HES1.p2~TFEB.p2 /HOMER:ATF3_K562-ATF3-ChIP-Seq~MYCN_mES-nMyc-ChIP-Seq~MAX_K562-Max-ChIP-Seq~USF1_GM12878-Usf1-ChIP-Seq~MYC_LNCAP-cMyc-ChIP-Seq~BHLHE40_HepG2-BHLHE40-ChIP-Seq~HIF1A_MCF7-HIF1a-ChIP-Seq~MYC_mES-cMyc-ChIP-Seq /UNIPROBE:Bhlhb2_primary;SCI09~Max_primary;SCI09~Max_secondary;SCI09~Bhlhb2_secondary;SCI09 /HOCOMOCO:TFE3_f1~TFEB_f1~BHE40_f2~BMAL1_f1~AHR_si~MYCN_si~MITF_f1~MYC_f1~ARNT_f1~HES1_f1~USF1_f1~HEY2_f1~HIF1A_si~MAX_f1~USF2_f1~ENOA_si
|name=known3
|name=known3
|representative_motif_db=HOCOMOCO
|representative_motif_db=HOCOMOCO

Revision as of 12:09, 13 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :known3
  • db :HOCOMOCO
  • Id :HEY2_f1
  • name  :
  • score :3.475964650151725
  • External refs:
EntrezGene:23493
UniProt:23493

  • Internal refs:
EntrezGene:23493


Motif matrix
P0ACGT
10.00.07.0303030303030320.969696969696968
20.01.9393939393939364.02.060606060606064
30.02.0606060606060643.0303030303030322.909090909090912
40.02.0606060606060644.9696969696969680.969696969696968
51.0909090909090880.06.9090909090909120.0
60.06.9090909090909120.01.090909090909088
74.00.00.9696969696969683.030303030303032
80.07.0303030303030320.9696969696969680.0
90.00.9696969696969687.0303030303030320.0
100.00.9696969696969680.07.030303030303032
110.00.08.00.0
120.9696969696969681.9393939393939365.0909090909090880.0
130.9696969696969685.9393939393939361.0909090909090880.0
142.9090909090909122.0606060606060640.9696969696969682.060606060606064
150.02.0606060606060640.9696969696969684.969696969696968
160.02.0606060606060642.9090909090909123.030303030303032
172.9393939393939362.0909090909090881.9696969696969681.0

Sub Motif Members

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=NonredundantMotifs:3&oldid=2578403"