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NonredundantMotifs:8: Difference between revisions

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{{Known_motif
{{Known_motif
|PWM=PO;A;C;G;T!1;11.023056;3.306158;0.833466;70.843797!2;5.126488;6.994371;56.933463;16.952155!3;1.575346;0;0;84.431131!4;77.786275;6.577658;0.83564;0.806904!5;75.656821;0;10.349656;0!6;0;0.908504;0;85.097973!7;0;85.217965;0;0.788512!8;2.548872;82.654094;0;0.803511!9;8.519188;76.552727;0.934562;0!10;82.778273;0;0.785576;2.442628!11;22.505869;3.328835;60.171773;0
|PWM=P0;A;C;G;T!1;3.6017786561264824;2.5345849802371596;10.965415019762863;7.76383399209487!2;7.683794466403187;5.015810276679856;2.9881422924901133;9.177865612648244!3;5.869565217391324;2.027667984189728;7.8972332015810425;9.071146245059317!4;13.873517786561292;7.043478260869574;3.9486166007905337;0.0!5;10.778656126482229;3.9486166007905337;2.9881422924901133;7.1501976284585265!6;6.936758893280646;5.9762845849802515;9.924901185770786;2.027667984189728!7;1.9209486166007959;3.9486166007905337;17.928853754940754;1.06719367588933!8;2.9881422924901133;0.0;21.877470355731262;0.0!9;23.79841897233208;1.06719367588933;0.0;0.0!10;0.0;0.0;0.0;24.8656126482214!11;0.9604743083003979;0.0;0.0;23.905138339921006!12;24.8656126482214;0.0;0.0;0.0!13;12.166007905138358;2.13438735177866;8.644268774703583;1.9209486166007959!14;11.739130434782624;3.9486166007905337;5.9762845849802515;3.201581027667993!15;4.162055335968388;3.9486166007905337;8.537549407114655;8.217391304347847
|entrez_gene_id=PITX1
|entrez_gene_id=5015
|motif_cluster_2013_march_motif_members= /SWISSREGULON:CRX.p2~PITX1..3.p2 /HOMER:CRX_Retina-Crx-ChIP-Seq /UNIPROBE:Obox1_3970.2;CELL08~Tcf1_secondary;SCI09~Crx_3485.1;CELL08~Pitx1_2312.1;CELL08~Otx2_3441.1;CELL08~Pitx2_2274.3;CELL08~Otx1_2325.1;CELL08~Pitx3_3497.2;CELL08~Obox6_3440.2;CELL08~Obox2_3438.2;CELL08~Obox3_3439.1;CELL08~Obox5_3963.2;CELL08~Obox5_2284.1;CELL08~Dmbx1_2277.1;CELL08~Gsc_2327.3;CELL08~Dobox5_3493.1;CELL08 /HOCOMOCO:PRRX1_f1~OTX1_f1~PITX2_si~OTX2_si~CRX_si
|motif_cluster_2013_march_motif_members= /HOCOMOCO:PRRX1_f1~OTX2_si~PITX2_si~CRX_si~OTX1_f1 /HOMER:CRX_Retina-Crx-ChIP-Seq /SWISSREGULON:PITX1..3.p2~CRX.p2 /UNIPROBE:Obox5_2284.1;CELL08~Pitx2_2274.3;CELL08~Otx1_2325.1;CELL08~Dobox5_3493.1;CELL08~Otx2_3441.1;CELL08~Obox5_3963.2;CELL08~Pitx1_2312.1;CELL08~Obox1_3970.2;CELL08~Obox2_3438.2;CELL08~Obox3_3439.1;CELL08~Pitx3_3497.2;CELL08~Tcf1_secondary;SCI09~Crx_3485.1;CELL08~Gsc_2327.3;CELL08~Obox6_3440.2;CELL08~Dmbx1_2277.1;CELL08
|name=known8
|name=non-redundant8
|representative_motif_db=SWISSREGULON
|representative_motif_db=HOCOMOCO
|representative_motif_id=PITX1..3.p2
|representative_motif_id=OTX2_si
|representative_motif_name=PITX1
|representative_motif_name=  
|score=0.3171283104135989
|score=0.21470130889751804
|uniprot_entry_name=PITX1
|uniprot_entry_name=OTX2_HUMAN
}}
}}
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Revision as of 16:46, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant8
  • db :HOCOMOCO
  • Id :OTX2_si
  • name  :
  • score :0.21470130889751804
  • External refs:
EntrezGene:5015
UniProt:5015

  • Internal refs:
EntrezGene:5015


Motif matrix
P0ACGT
13.60177865612648242.534584980237159610.9654150197628637.76383399209487
27.6837944664031875.0158102766798562.98814229249011339.177865612648244
35.8695652173913242.0276679841897287.89723320158104259.071146245059317
413.8735177865612927.0434782608695743.94861660079053370.0
510.7786561264822293.94861660079053372.98814229249011337.1501976284585265
66.9367588932806465.97628458498025159.9249011857707862.027667984189728
71.92094861660079593.948616600790533717.9288537549407541.06719367588933
82.98814229249011330.021.8774703557312620.0
923.798418972332081.067193675889330.00.0
100.00.00.024.8656126482214
110.96047430830039790.00.023.905138339921006
1224.86561264822140.00.00.0
1312.1660079051383582.134387351778668.6442687747035831.9209486166007959
1411.7391304347826243.94861660079053375.97628458498025153.201581027667993
154.1620553359683883.94861660079053378.5375494071146558.217391304347847

Sub Motif Members

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