NonredundantMotifs:194

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

• Name :non-redundant194
• db :SWISSREGULON
• Id :NANOG(mouse).p2
• name :NANOG(mouse)
• score :0.05590746534872926
  
• External refs:

EntrezGene:NANOG(mouse)
UniProt:NANOG(mouse)

• Internal refs:

EntrezGene:NANOG(mouse)

Motif matrix
PO A C G T 01 20.00 15.00 55.00 10.00 02 21.00 12.00 61.00 6.00 03 24.00 1.00 74.00 1.00 04 34.00 36.00 29.00 1.00 05 8.08 62.63 0.00 29.29 06 1.00 98.00 1.00 0.00 07 98.00 1.00 0.00 1.00 08 3.00 0.00 3.00 94.00 09 0.00 1.00 0.00 99.00 10 16.00 2.00 33.00 49.00 11 20.00 62.00 10.00 8.00 12 0.00 100.00 0.00 0.00