NonredundantMotifs:7: Difference between revisions
From FANTOM5_SSTAR
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|entrez_gene_id=3725
|motif_cluster_2013_march_motif_members= /SWISSREGULON:NFE2L2.p2~FOSL2.p2~BACH2.p2~NFE2.p2~FOS_FOS{B,L1}_JUN{B,D}.p2 /HOMER:NFE2_K562-NF...") |
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{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1;865.7865830826214;574.7683450429025;519.8758744008497;265.1051986017543!2;58.6496882822828;58.38180318779343;96.83709891971665;2011.6674107383349!3;69.51410292946541;66.5203652323738;1940.1747779053112;149.32675506097732!4;1975.19481612222;128.02866196266368;23.733139038487604;98.57938400475724!5;298.95993505693986;1.2433098123149522;1925.3327562588718;0.0!6;49.53609628807036;19.879413473503902;15.616191355339701;2140.504300011215!7;70.65466365027395;2123.127024812152;22.672064237045564;9.082248428659014!8;2186.8498256500366;18.08247675698738;7.853675999976392;12.750022721130764!9;101.4030389703175;816.5374985948242;437.6963304793523;869.899133083633 | |||
|entrez_gene_id=3725 | |entrez_gene_id=3725 | ||
|motif_cluster_2013_march_motif_members= / | |motif_cluster_2013_march_motif_members= /HOCOMOCO:JUND_f1~FOSL2_f1~SMRC1_f1~JUN_f1~NF2L2_si~JUNB_f1~BACH1_si~FOSL1_f2~BATF_si~NFE2_f2~MAFK_si~FOSB_f1 /HOMER:NFE2_K562-NFE2-ChIP-Seq~JUN_motifA;K562-cJun-ChIP-Seq /JASPAR:MA0099.2;AP1~MA0150.1;NFE2L2 /SWISSREGULON:NFE2.p2~BACH2.p2~NFE2L2.p2~FOS_FOS(B,L1)_JUN(B,D).p2~FOSL2.p2 /UNIPROBE:Jundm2_secondary;SCI09~GCN4;NAR10~Jun_Fos;NAR10~Zfp691_secondary;SCI09 | ||
|name= | |name=non-redundant7 | ||
|representative_motif_db=HOCOMOCO | |representative_motif_db=HOCOMOCO | ||
|representative_motif_id=JUN_f1 | |representative_motif_id=JUN_f1 | ||
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[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant7
- db :HOCOMOCO
- Id :JUN_f1
- name :
- score :1.9588444942252214
- External refs:
- Internal refs:
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Sub Motif Members
