NonredundantMotifs:8: Difference between revisions
From FANTOM5_SSTAR
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|entrez_gene_id=
|motif_cluster_2013_march_motif_members= /SWISSREGULON:CRX.p2~PITX1..3.p2 /HOMER:CRX_Retina-Crx-ChIP-Seq /HOCOMOCO:PRRX1_f1~OTX1_f1~PITX2_s...") |
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{{Known_motif | {{Known_motif | ||
|entrez_gene_id= | |PWM=P0;A;C;G;T!1;3.6017786561264824;2.5345849802371596;10.965415019762863;7.76383399209487!2;7.683794466403187;5.015810276679856;2.9881422924901133;9.177865612648244!3;5.869565217391324;2.027667984189728;7.8972332015810425;9.071146245059317!4;13.873517786561292;7.043478260869574;3.9486166007905337;0.0!5;10.778656126482229;3.9486166007905337;2.9881422924901133;7.1501976284585265!6;6.936758893280646;5.9762845849802515;9.924901185770786;2.027667984189728!7;1.9209486166007959;3.9486166007905337;17.928853754940754;1.06719367588933!8;2.9881422924901133;0.0;21.877470355731262;0.0!9;23.79841897233208;1.06719367588933;0.0;0.0!10;0.0;0.0;0.0;24.8656126482214!11;0.9604743083003979;0.0;0.0;23.905138339921006!12;24.8656126482214;0.0;0.0;0.0!13;12.166007905138358;2.13438735177866;8.644268774703583;1.9209486166007959!14;11.739130434782624;3.9486166007905337;5.9762845849802515;3.201581027667993!15;4.162055335968388;3.9486166007905337;8.537549407114655;8.217391304347847 | ||
|motif_cluster_2013_march_motif_members= / | |entrez_gene_id=5015 | ||
|name= | |motif_cluster_2013_march_motif_members= /HOCOMOCO:PRRX1_f1~OTX2_si~PITX2_si~CRX_si~OTX1_f1 /HOMER:CRX_Retina-Crx-ChIP-Seq /SWISSREGULON:PITX1..3.p2~CRX.p2 /UNIPROBE:Obox5_2284.1;CELL08~Pitx2_2274.3;CELL08~Otx1_2325.1;CELL08~Dobox5_3493.1;CELL08~Otx2_3441.1;CELL08~Obox5_3963.2;CELL08~Pitx1_2312.1;CELL08~Obox1_3970.2;CELL08~Obox2_3438.2;CELL08~Obox3_3439.1;CELL08~Pitx3_3497.2;CELL08~Tcf1_secondary;SCI09~Crx_3485.1;CELL08~Gsc_2327.3;CELL08~Obox6_3440.2;CELL08~Dmbx1_2277.1;CELL08 | ||
|representative_motif_db= | |name=non-redundant8 | ||
|representative_motif_id= | |representative_motif_db=HOCOMOCO | ||
|representative_motif_id=OTX2_si | |||
|representative_motif_name= | |representative_motif_name= | ||
|score=0. | |score=0.21470130889751804 | ||
|uniprot_entry_name= | |uniprot_entry_name=OTX2_HUMAN | ||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant8
- db :HOCOMOCO
- Id :OTX2_si
- name :
- score :0.21470130889751804
- External refs:
- Internal refs:
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Sub Motif Members
