NonredundantMotifs:20: Difference between revisions
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{{Known_motif | {{Known_motif | ||
|entrez_gene_id= | |PWM=P0;A;C;G;T!1;68.97234798731655;57.30914483367757;132.88076121246598;26.51473889732101!2;0.0;0.7896001522142723;0.6141334517222098;284.27325932684454!3;0.701866801968241;0.0;280.5884586165112;4.386667512301503!4;283.3959258243841;0.701866801968241;1.5792003044285416;0.0!5;0.0;251.7049192625467;19.145137476654476;14.826936191579087!6;5.17626766451577;2.017867055658692;274.885790850519;3.597067360087236!7;13.774135988626742;73.70994890060186;6.053601166976081;192.13930687457574!8;79.3933495435741;149.32543195451322;39.587008083979526;17.371203348713948!9;165.31750125139388;35.94607404876914;43.84207557091209;40.571342059705614 | ||
|motif_cluster_2013_march_motif_members= | |entrez_gene_id=1385 | ||
|name= | |motif_cluster_2013_march_motif_members= /HOCOMOCO:CREB1_f1~E4F1_f1~CREM_f1~ATF2+ATF4_f1~ATF3_f1~ATF1_si /HOMER:JUND_K562-JunD-ChIP-Seq~JUN_motifB;K562-cJun-ChIP-Seq /JASPAR:MA0018.2;CREB1 /SWISSREGULON:JUN.p2~ATF5_CREB3.p2~ATF4.p2~CREB1.p2 /UNIPROBE:Atf1_primary;SCI09~Jundm2_primary;SCI09~Gmeb1_primary;SCI09 | ||
|representative_motif_db= | |name=non-redundant20 | ||
|representative_motif_id= | |representative_motif_db=HOCOMOCO | ||
|representative_motif_name= | |representative_motif_id=CREB1_f1 | ||
|score=0. | |representative_motif_name= | ||
|uniprot_entry_name= | |score=0.4550053399821507 | ||
|uniprot_entry_name=CREB1_HUMAN | |||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant20
- db :HOCOMOCO
- Id :CREB1_f1
- name :
- score :0.4550053399821507
- External refs:
- Internal refs:
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Sub Motif Members
