NonredundantMotifs:28: Difference between revisions
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|motif_cluster_2013_march_motif_members= /SWISSREGULON:DMAP1_NCOR{1,2}_SMARC.p2~MYB.p2~MYBL2.p2 /HOMER:MYB_ERMYB-Myb-ChIPSeq(GSE22095)~MYBL2...") |
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{{Known_motif | {{Known_motif | ||
|entrez_gene_id= | |PWM=PO;A;C;G;T!1;424;566;470;548!2;622;550;28;808!3;1990;2;2;14!4;2002;2;2;2!5;16;1988;2;2!6;259;492;608;649!7;2;2;2002;2!8;420;774;133;681!9;323;868;8;809!10;635;470;602;301 | ||
|motif_cluster_2013_march_motif_members= / | |entrez_gene_id=4605 | ||
|name= | |motif_cluster_2013_march_motif_members= /HOCOMOCO:OVOL1_f1~MYB_f1 /HOMER:MYBL2_Hela-BMYB-ChIPSeq(GSE27030)~MYB_ERMYB-Myb-ChIPSeq(GSE22095) /JASPAR:MA0100.1;Myb /SWISSREGULON:MYB.p2~MYBL2.p2~DMAP1_NCOR(1,2)_SMARC.p2 /UNIPROBE:Mybl1_primary;SCI09~Myb_primary;SCI09~Mybl1_secondary;SCI09~Myb_secondary;SCI09 | ||
|representative_motif_db= | |name=non-redundant28 | ||
|representative_motif_id= | |representative_motif_db=HOMER | ||
|representative_motif_id=MYBL2_Hela-BMYB-ChIPSeq(GSE27030) | |||
|representative_motif_name= | |representative_motif_name= | ||
|score=0. | |score=0.18323713605328915 | ||
|uniprot_entry_name= | |uniprot_entry_name=MYBB_HUMAN | ||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant28
- db :HOMER
- Id :MYBL2_Hela-BMYB-ChIPSeq(GSE27030)
- name :
- score :0.18323713605328915
- External refs:
- Internal refs:
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Sub Motif Members
