NonredundantMotifs:45: Difference between revisions
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|entrez_gene_id=389692
|motif_cluster_2013_march_motif_members= /SWISSREGULON:MAFB.p2 /HOMER:MAFA_Islet-MafA-ChIP-Seq(GSE30298) /JASPAR:MA0117.1;Mafb /HOCO...") |
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{{Known_motif | {{Known_motif | ||
|entrez_gene_id= | |PWM=PO;A;C;G;T!1;0;0;430.143847;0!2;2.064792;426.32868;0;1.750375!3;0;72.81082;10.185366;347.147661!4;5.314898;0.713007;423.411131;0.704811!5;396.956227;31.47169;0;1.71593!6;35.561664;307.812931;12.203589;74.565663!7;61.537036;3.110382;293.070654;72.425775!8;11.121476;199.278785;169.965656;49.77793 | ||
|motif_cluster_2013_march_motif_members= / | |entrez_gene_id=MAFB | ||
|name= | |motif_cluster_2013_march_motif_members= /HOCOMOCO:MAFA_f1~MAF_f1~MAFB_f1 /HOMER:MAFA_Islet-MafA-ChIP-Seq(GSE30298) /JASPAR:MA0117.1;Mafb /SWISSREGULON:MAFB.p2 /UNIPROBE:Mafb_primary;SCI09~Mafk_primary;SCI09 | ||
|representative_motif_db= | |name=non-redundant45 | ||
|representative_motif_id= | |representative_motif_db=SWISSREGULON | ||
|representative_motif_name= | |representative_motif_id=MAFB.p2 | ||
|score= | |representative_motif_name=MAFB | ||
|uniprot_entry_name= | |score=0.3684149589669981 | ||
|uniprot_entry_name=MAFB | |||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant45
- db :SWISSREGULON
- Id :MAFB.p2
- name :MAFB
- score :0.3684149589669981
- External refs:
- Internal refs:
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Sub Motif Members
