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NonredundantMotifs:55: Difference between revisions

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|PWM=P0;A;C;G;T!1;0.174039591746383;0.367917808376691;0.270176288061016;0.18786631181591!2;0.359560309475115;0.309872175539918;0.111047091794689;0.219520423190278!3;0.0944683036866483;0.790352458904872;0.0260338276643511;0.0891454097441286!4;0.114860285151229;0.779490252302552;0.0508946340643847;0.0547548284818338!5;0.105194978758313;0.837711636099516;0.0318568613529546;0.0252365237892168!6;0.0452340382891032;0.825038720993972;0.0739899787188562;0.0557372619980684!7;0.145554738614157;0.592986406651292;0.228414503273096;0.0330443514614552!8;0.045273191233523;0.175000890728307;0.607614869174327;0.172111048863843!9;0.0557372619980684;0.0739899787188562;0.825038720993972;0.0452340382891032!10;0.0252365237892168;0.0318568613529545;0.837711636099516;0.105194978758313!11;0.0547548284818338;0.0508946340643847;0.779490252302552;0.114860285151229!12;0.0891454097441286;0.0260338276643511;0.790352458904872;0.0944683036866483!13;0.0608325786474077;0.0677871868953474;0.717352267276858;0.154027967180387!14;0.0977422772443525;0.194545217643926;0.591608125508604;0.116104379603117
|PWM=P0;A;C;G;T!1;0.174039591746383;0.367917808376691;0.270176288061016;0.18786631181591!2;0.359560309475115;0.309872175539918;0.111047091794689;0.219520423190278!3;0.0944683036866483;0.790352458904872;0.0260338276643511;0.0891454097441286!4;0.114860285151229;0.779490252302552;0.0508946340643847;0.0547548284818338!5;0.105194978758313;0.837711636099516;0.0318568613529546;0.0252365237892168!6;0.0452340382891032;0.825038720993972;0.0739899787188562;0.0557372619980684!7;0.145554738614157;0.592986406651292;0.228414503273096;0.0330443514614552!8;0.045273191233523;0.175000890728307;0.607614869174327;0.172111048863843!9;0.0557372619980684;0.0739899787188562;0.825038720993972;0.0452340382891032!10;0.0252365237892168;0.0318568613529545;0.837711636099516;0.105194978758313!11;0.0547548284818338;0.0508946340643847;0.779490252302552;0.114860285151229!12;0.0891454097441286;0.0260338276643511;0.790352458904872;0.0944683036866483!13;0.0608325786474077;0.0677871868953474;0.717352267276858;0.154027967180387!14;0.0977422772443525;0.194545217643926;0.591608125508604;0.116104379603117
|entrez_gene_id=7545
|entrez_gene_id=7545
|motif_cluster_2013_march_motif_members= /JASPAR:MA0116.1;Zfp423 /SWISSREGULON:ZNF423.p2 /UNIPROBE:Zic3_primary;SCI09~Zic1_primary;SCI09~Zic2_primary;SCI09 /HOCOMOCO:ZN423_f1
|motif_cluster_2013_march_motif_members= /HOCOMOCO:ZN423_f1 /JASPAR:MA0116.1;Zfp423 /SWISSREGULON:ZNF423.p2 /UNIPROBE:Zic3_primary;SCI09~Zic2_primary;SCI09~Zic1_primary;SCI09
|name=known55
|name=non-redundant55
|representative_motif_db=UNIPROBE
|representative_motif_db=UNIPROBE
|representative_motif_id=Zic1_primary
|representative_motif_id=Zic1_primary
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[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Latest revision as of 10:21, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant55
  • db :UNIPROBE
  • Id :Zic1_primary
  • name :SCI09
  • score :1.9305460342991163
  • External refs:
EntrezGene:7545
UniProt:7545

  • Internal refs:
EntrezGene:7545


Motif matrix
P0ACGT
10.1740395917463830.3679178083766910.2701762880610160.18786631181591
20.3595603094751150.3098721755399180.1110470917946890.219520423190278
30.09446830368664830.7903524589048720.02603382766435110.0891454097441286
40.1148602851512290.7794902523025520.05089463406438470.0547548284818338
50.1051949787583130.8377116360995160.03185686135295460.0252365237892168
60.04523403828910320.8250387209939720.07398997871885620.0557372619980684
70.1455547386141570.5929864066512920.2284145032730960.0330443514614552
80.0452731912335230.1750008907283070.6076148691743270.172111048863843
90.05573726199806840.07398997871885620.8250387209939720.0452340382891032
100.02523652378921680.03185686135295450.8377116360995160.105194978758313
110.05475482848183380.05089463406438470.7794902523025520.114860285151229
120.08914540974412860.02603382766435110.7903524589048720.0944683036866483
130.06083257864740770.06778718689534740.7173522672768580.154027967180387
140.09774227724435250.1945452176439260.5916081255086040.116104379603117

Sub Motif Members

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