NonredundantMotifs:61: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{Known_motif
|entrez_gene_id=10664
|motif_cluster_2013_march_motif_members= /SWISSREGULON:CTCF.p2 /HOMER:CTCFL_K562-CTCFL-ChIP-Seq~CTCF_CD4+-CTCF-ChIP-Seq /JASPAR:MA0139...") |
m (Autoedit moved page NonredundantMotifs:Motif61 to NonredundantMotifs:61 without leaving a redirect: NSchange) |
||
| (6 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1;280.5564199254187;890.0926431787442;420.4217047051987;1270.2371713144134!2;464.4796836864638;464.4744046828397;1268.3183710759745;664.0354796784958!3;687.9014166643329;231.04984596173216;1529.2975805851677;413.05909591254647!4;170.70519816256572;2433.9464715689414;115.160130914649;141.49613847763507!5;23.531152707659633;2748.7918521774864;34.58431372127447;54.40062051736051!6;1923.8530734004937;92.74285403930718;537.7400196660248;306.97199201797827!7;115.80735198467234;1677.904406658909;1024.690902071826;42.90527840837429!8;354.7811469550338;1303.7856977334266;385.16201639799124;817.5790780373256!9;2387.2992063806114;177.09130221149164;143.15107178185102;153.76635874984012!10;8.122720219673088;11.072312566288444;2802.158899057837;39.95400727997823!11;967.0798860762594;16.459715524955975;1866.2867422695047;11.481595253063388!12;157.8770562578218;107.68653129505327;1625.5519679962422;970.1923835746661!13;38.69136303693416;0.5947961935945176;2787.977274245084;34.04450564816709!14;118.17120639074078;62.786839933313395;2511.82509312037;168.52479967936407!15;296.475244511232;2357.2406179976124;41.03911903974291;166.5529575752058!16;1290.0134755976605;41.51712114415936;1475.332731577269;54.44461080469106!17;178.43560540701907;1445.8638995563858;1130.0211021453563;106.98733201501787!18;399.2442541928694;1002.3805140210958;311.63779248593625;1148.0453784238705!19;1132.0681318726963;693.1417630926046;889.0964378375724;147.00160632089722 | |||
|entrez_gene_id=10664 | |entrez_gene_id=10664 | ||
|motif_cluster_2013_march_motif_members= / | |motif_cluster_2013_march_motif_members= /HOCOMOCO:CTCF_f2 /HOMER:CTCF_CD4+-CTCF-ChIP-Seq~CTCFL_K562-CTCFL-ChIP-Seq /JASPAR:MA0139.1;CTCF /SWISSREGULON:CTCF.p2 | ||
|name= | |name=non-redundant61 | ||
|representative_motif_db=HOCOMOCO | |representative_motif_db=HOCOMOCO | ||
|representative_motif_id=CTCF_f2 | |representative_motif_id=CTCF_f2 | ||
| Line 11: | Line 12: | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant61
- db :HOCOMOCO
- Id :CTCF_f2
- name :
- score :2.27747693767069
- External refs:
- Internal refs:
| Motif matrix | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sub Motif Members
