NonredundantMotifs:67: Difference between revisions
From FANTOM5_SSTAR
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|motif_cluster_2013_march_motif_members= /SWISSREGULON:TLX1..3_NFIC{dimer}.p2~NFIX.p2 /HOMER:NFIC_LNCAP-NF1-ChIP-Seq /JASPAR:MA0119.1;TLX1:...") |
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{{Known_motif | {{Known_motif | ||
|entrez_gene_id= | |PWM=P0;A;C;G;T!1;33.86721125369617;49.8441744727729;25.19463142453828;124.09398284899267!2;7.810959795993017;7.100872541811832;16.129124773544007;201.95904288865188!3;10.65130881271776;2.028820726231953;204.5965098327535;15.723360628297629!4;15.317596483051227;6.897990469188642;199.22013490823866;11.564278139522134!5;25.86746425945732;167.87485468795472;26.78043358626172;12.477247466326508!6;96.74310062734916;58.25062877548366;28.5296626871532;49.47660791001422!7;50.05989386880585;76.27988665341896;48.2333264397134;58.42689303806155!8;85.63062638443886;0.4226709846316574;146.69310004015108;0.2536025907789935!9;53.66042188238378;50.820072865659036;80.23545829408754;48.28404695786917!10;70.49963391010914;30.481773860667538;23.686481978758106;108.33211025046546!11;17.57465954098429;16.154485032621917;171.60281277240597;27.66804265398823!12;13.897421974688879;189.27891334970207;14.658229747025862;15.165434928583835!13;13.288775756819287;195.46681656470952;13.390216793130882;10.854190885340948!14;181.5186740718647;14.91183233780485;16.382727364323017;20.186766226007933!15;102.67865880254483;20.921584963783275;82.69603220012739;26.7037240335444 | ||
|motif_cluster_2013_march_motif_members= / | |entrez_gene_id=4774,4781,4782,4784 | ||
|name= | |motif_cluster_2013_march_motif_members= /HOCOMOCO:NFIA+NFIB+NFIC+NFIX_f2 /HOMER:NFIC_LNCAP-NF1-ChIP-Seq /JASPAR:MA0119.1;TLX1::NFIC /SWISSREGULON:TLX1..3_NFIC(dimer).p2~NFIX.p2 | ||
|representative_motif_db= | |name=non-redundant67 | ||
|representative_motif_id= | |representative_motif_db=HOCOMOCO | ||
|representative_motif_id=NFIA+NFIB+NFIC+NFIX_f2 | |||
|representative_motif_name= | |representative_motif_name= | ||
|score= | |score=0.40395829448506826 | ||
|uniprot_entry_name= | |uniprot_entry_name=NFIA_HUMAN,NFIB_HUMAN,NFIC_HUMAN,NFIX_HUMAN | ||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant67
- db :HOCOMOCO
- Id :NFIA+NFIB+NFIC+NFIX_f2
- name :
- score :0.40395829448506826
- External refs:
- Internal refs:
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Sub Motif Members
