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|PWM=P0;A;C;G;T!1;0.544797687861271;4.302023121387277;6.556358381502891;1.596820809248561!2;0.0;7.815028901734106;2.630057803468212;2.554913294797682!3;2.2543352601156013;10.369942196531788;0.0;0.3757225433526006!4;3.419075144508673;0.1878612716763003;2.442196531791913;6.950867052023115!5;0.0;0.7514450867052025;11.196531791907514;1.0520231213872835!6;5.786127167630056;3.6820809248554887;2.479768786127165;1.0520231213872835!7;4.132947976878617;3.531791907514455;2.404624277456648;2.930635838150293!8;3.1560693641618442;6.537572254335265;0.3757225433526006;2.930635838150293!9;4.283236994219651;0.3757225433526006;3.1560693641618442;5.184971098265894!10;2.141618497109832;3.193641618497109;6.124277456647402;1.54046242774567!11;5.823699421965321;0.1878612716763003;6.800578034682081;0.1878612716763003!12;0.0;10.820809248554903;2.179190751445084;0.0!13;2.2543352601156013;9.317919075144511;0.0;1.427745664739888!14;5.898843930635838;0.1878612716763003;4.621387283236997;2.291907514450866!15;0.0;0.0;13.0;0.0!16;9.543352601156062;1.427745664739888;0.6763005780346816;1.352601156069358
|PWM=P0;A;C;G;T!1;0.544797687861271;4.302023121387277;6.556358381502891;1.596820809248561!2;0.0;7.815028901734106;2.630057803468212;2.554913294797682!3;2.2543352601156013;10.369942196531788;0.0;0.3757225433526006!4;3.419075144508673;0.1878612716763003;2.442196531791913;6.950867052023115!5;0.0;0.7514450867052025;11.196531791907514;1.0520231213872835!6;5.786127167630056;3.6820809248554887;2.479768786127165;1.0520231213872835!7;4.132947976878617;3.531791907514455;2.404624277456648;2.930635838150293!8;3.1560693641618442;6.537572254335265;0.3757225433526006;2.930635838150293!9;4.283236994219651;0.3757225433526006;3.1560693641618442;5.184971098265894!10;2.141618497109832;3.193641618497109;6.124277456647402;1.54046242774567!11;5.823699421965321;0.1878612716763003;6.800578034682081;0.1878612716763003!12;0.0;10.820809248554903;2.179190751445084;0.0!13;2.2543352601156013;9.317919075144511;0.0;1.427745664739888!14;5.898843930635838;0.1878612716763003;4.621387283236997;2.291907514450866!15;0.0;0.0;13.0;0.0!16;9.543352601156062;1.427745664739888;0.6763005780346816;1.352601156069358
|entrez_gene_id=7024
|entrez_gene_id=7024
|motif_cluster_2013_march_motif_members= /JASPAR:MA0145.1;Tcfcp2l1 /SWISSREGULON:TFCP2.p2 /HOMER:TFCP2L1_mES-Tfcp2l1-ChIP-Seq /HOCOMOCO:TFCP2_f1
|motif_cluster_2013_march_motif_members= /HOCOMOCO:TFCP2_f1 /HOMER:TFCP2L1_mES-Tfcp2l1-ChIP-Seq /JASPAR:MA0145.1;Tcfcp2l1 /SWISSREGULON:TFCP2.p2
|name=known76
|name=non-redundant76
|representative_motif_db=HOCOMOCO
|representative_motif_db=HOCOMOCO
|representative_motif_id=TFCP2_f1
|representative_motif_id=TFCP2_f1
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[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Latest revision as of 10:21, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant76
  • db :HOCOMOCO
  • Id :TFCP2_f1
  • name  :
  • score :2.029934955688791
  • External refs:
EntrezGene:7024
UniProt:7024

  • Internal refs:
EntrezGene:7024


Motif matrix
P0ACGT
10.5447976878612714.3020231213872776.5563583815028911.596820809248561
20.07.8150289017341062.6300578034682122.554913294797682
32.254335260115601310.3699421965317880.00.3757225433526006
43.4190751445086730.18786127167630032.4421965317919136.950867052023115
50.00.751445086705202511.1965317919075141.0520231213872835
65.7861271676300563.68208092485548872.4797687861271651.0520231213872835
74.1329479768786173.5317919075144552.4046242774566482.930635838150293
83.15606936416184426.5375722543352650.37572254335260062.930635838150293
94.2832369942196510.37572254335260063.15606936416184425.184971098265894
102.1416184971098323.1936416184971096.1242774566474021.54046242774567
115.8236994219653210.18786127167630036.8005780346820810.1878612716763003
120.010.8208092485549032.1791907514450840.0
132.25433526011560139.3179190751445110.01.427745664739888
145.8988439306358380.18786127167630034.6213872832369972.291907514450866
150.00.013.00.0
169.5433526011560621.4277456647398880.67630057803468161.352601156069358

Sub Motif Members

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