NonredundantMotifs:85: Difference between revisions
From FANTOM5_SSTAR
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|entrez_gene_id=
|motif_cluster_2013_march_motif_members= /SWISSREGULON:EVI1.p2 /JASPAR:MA0029.1;Evi1 /HOCOMOCO:EVI1_f1
|name=known85
|representative_moti...") |
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{{Known_motif | {{Known_motif | ||
|entrez_gene_id= | |PWM=PO;A;C;G;T!1;111.999089;10.282831;34.622885;26.832715!2;150.824301;0;16.413455;16.499764!3;5.50275;5.726982;164.213447;8.294341!4;173.76799;5.312885;1.928852;2.727793!5;37.835213;71.167831;5.398375;69.336101!6;178.099433;1.940236;3.697851;0!7;161.884421;0;20.142677;1.710422!8;6.247784;2.603933;173.045476;1.840327!9;175.46784;0.861074;6.566768;0.841838!10;12.80888;35.686617;2.695602;132.546421!11;157.550982;7.317279;6.402303;12.466956!12;162.222251;0;21.515269;0!13;60.364844;37.526971;45.763322;40.082383!14;118.568823;29.171465;21.922535;14.074697 | ||
|motif_cluster_2013_march_motif_members= / | |entrez_gene_id=EVI1 | ||
|name= | |motif_cluster_2013_march_motif_members= /HOCOMOCO:EVI1_f1 /JASPAR:MA0029.1;Evi1 /SWISSREGULON:EVI1.p2 | ||
|name=non-redundant85 | |||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
|representative_motif_id=EVI1.p2 | |representative_motif_id=EVI1.p2 | ||
|representative_motif_name= | |representative_motif_name=EVI1 | ||
|score=0.07896497249634593 | |score=0.07896497249634593 | ||
|uniprot_entry_name= | |uniprot_entry_name=EVI1 | ||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant85
- db :SWISSREGULON
- Id :EVI1.p2
- name :EVI1
- score :0.07896497249634593
- External refs:
- Internal refs:
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Sub Motif Members
