NonredundantMotifs:91: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{Known_motif
|entrez_gene_id=5991
|motif_cluster_2013_march_motif_members= /UNIPROBE:Rfx4_secondary;SCI09~Rfx3_secondary;SCI09~Rfxdc2_secondary;SCI09
|name=known91
|repr...") |
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{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1;0.314513906043393;0.275351986696445;0.257616604464868;0.152517502795295!2;0.126938740270949;0.598294124188177;0.130575622432586;0.144191513108288!3;0.102264501274458;0.155333658678012;0.177956876587744;0.564444963459786!4;0.129288281532144;0.282677986963689;0.326989810522106;0.261043920982061!5;0.318165762969654;0.22782297902013;0.17568085845375;0.278330399556466!6;0.109019256525864;0.38083805723801;0.27832750757358;0.231815178662545!7;0.226145422193051;0.289206322628084;0.291300351993752;0.193347903185114!8;0.0358628968725205;0.844339405858352;0.0725818738688831;0.047215823400244!9;0.223792603436246;0.187243542641412;0.088092458558075;0.500871395364267!10;0.0398002170289902;0.029681404606728;0.0262011632797152;0.904317215084567!11;0.298298115892507;0.0321473955389188;0.654745851794634;0.0148086367739403!12;0.0147289622653183;0.0220233226585366;0.944825901859478;0.0184218132166674!13;0.485114359210143;0.0049249070130092;0.0137845742829862;0.496176159493862!14;0.0357075048270461;0.0203809715130823;0.240803698671853;0.703107824988019!15;0.951151624876946;0.012738033130385;0.0178860810622747;0.0182242609303939!16;0.0237133976469831;0.944393882508612;0.0095377104705711;0.0223550093738339!17;0.291066851174228;0.385205445176838;0.232388435054478;0.0913392685944557!18;0.340333997680923;0.199588034706489;0.311525697304929;0.148552270307658!19;0.198713320913973;0.47213824347238;0.178318679551308;0.15082975606234!20;0.321155300689425;0.269931579233006;0.311301046952266;0.0976120731253035!21;0.412645779419669;0.195251529090451;0.231950327551075;0.160152363938805!22;0.297134124348331;0.180928100035569;0.250399684910501;0.271538090705599!23;0.151169100606394;0.305385869807582;0.358573590337954;0.18487143924807 | |||
|entrez_gene_id=5991 | |entrez_gene_id=5991 | ||
|motif_cluster_2013_march_motif_members= /UNIPROBE:Rfx4_secondary;SCI09~Rfx3_secondary;SCI09~Rfxdc2_secondary;SCI09 | |motif_cluster_2013_march_motif_members= /UNIPROBE:Rfx4_secondary;SCI09~Rfx3_secondary;SCI09~Rfxdc2_secondary;SCI09 | ||
|name= | |name=non-redundant91 | ||
|representative_motif_db=UNIPROBE | |representative_motif_db=UNIPROBE | ||
|representative_motif_id=Rfx3_secondary | |representative_motif_id=Rfx3_secondary | ||
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[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant91
- db :UNIPROBE
- Id :Rfx3_secondary
- name :SCI09
- score :0.11922538800456256
- External refs:
- Internal refs:
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Sub Motif Members
