NonredundantMotifs:96: Difference between revisions
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{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1;7;2;11;1!2;20;0;1;0!3;16;2;1;2!4;11;1;1;8!5;13;1;3;4!6;11;3;1;6!7;6;1;2;12!8;9;1;1;10!9;5;3;6;7!10;5;11;1;4!11;6;11;4;0!12;7;7;5;2!13;8;7;2;4!14;6;5;1;9!15;10;5;4;2!16;4;8;4;5!17;3;6;4;8!18;7;8;3;3!19;4;9;3;5!20;9;6;2;4!21;5;7;5;4!22;5;6;2;8!23;7;11;0;3!24;6;9;1;5!25;3;12;2;4!26;7;9;2;3!27;3;12;2;4!28;1;11;3;6!29;6;11;1;3!30;3;13;2;3 | |||
|entrez_gene_id=5078 | |entrez_gene_id=5078 | ||
|motif_cluster_2013_march_motif_members= /JASPAR:MA0068.1;Pax4 /SWISSREGULON:PAX4.p2 | |motif_cluster_2013_march_motif_members= /JASPAR:MA0068.1;Pax4 /SWISSREGULON:PAX4.p2 | ||
|name= | |name=non-redundant96 | ||
|representative_motif_db=JASPAR | |representative_motif_db=JASPAR | ||
|representative_motif_id=MA0068.1 | |representative_motif_id=MA0068.1 | ||
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[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant96
- db :JASPAR
- Id :MA0068.1
- name :Pax4
- score :0.15303533036622993
- External refs:
- Internal refs:
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Sub Motif Members
