NonredundantMotifs:150: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{Known_motif
|entrez_gene_id=
|motif_cluster_2013_march_motif_members= /SWISSREGULON:HOX{A5,B5}.p2
|name=known150
|representative_motif_db=SWISSREGULON
|representative_...") |
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{{Known_motif | {{Known_motif | ||
|entrez_gene_id= | |PWM=PO;A;C;G;T!1;32.652369;49.645284;25.143821;168.016337!2;19.795402;71.148238;133.87144;50.642731!3;19.642589;185.480693;31.576872;38.757657!4;57.977116;143.143497;11.039453;63.297745!5;78.367393;124.77455;7.617958;64.69791!6;84.007147;74.630565;27.248819;89.57128!7;25.856554;137.227254;43.778716;68.595287!8;55.373057;67.438121;7.193718;145.452915!9;21.144388;114.767807;21.359345;118.186271!10;21.203892;237.724668;3.473775;13.055476!11;30.259889;178.841815;14.025013;52.331094!12;21.589623;152.35104;2.357525;99.159623!13;40.6671;191.691827;6.300925;36.797959!14;229.542383;12.397945;23.009236;10.508247!15;5.708053;13.103787;4.830926;251.815045!16;2.459556;24.515158;8.16236;240.320737!17;220.75601;20.512557;17.877866;16.311378!18;5.761396;87.846367;79.469502;102.380546!19;6.267044;54.124006;4.948551;210.11821!20;40.420281;80.953905;112.984996;41.098629!21;46.749459;111.127125;59.814251;57.766976!22;84.096114;19.79111;82.6323009999999;88.9382860000001!23;50.564299;128.678881;29.277327;66.937304!24;79.050257;70.612716;73.778101;52.016737!25;96.148222;115.562844;19.100366;44.646379!26;61.147827;123.780276;47.459665;43.070043!27;66.520138;107.600672;8.094193;93.242808!28;17.556557;109.96729;5.51005;142.423914!29;28.959766;177.763193;32.963672;35.77118!30;98.229717;75.055955;50.30221;51.869929 | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:HOX | |entrez_gene_id=3202,3215 | ||
|name= | |motif_cluster_2013_march_motif_members= /SWISSREGULON:HOX(A5,B5).p2 | ||
|name=non-redundant150 | |||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
|representative_motif_id=HOX | |representative_motif_id=HOX(A5,B5).p2 | ||
|representative_motif_name= | |representative_motif_name=HOX(A5,B5) | ||
|score=1.4757324038886515 | |score=1.4757324038886515 | ||
|uniprot_entry_name= | |uniprot_entry_name=HOX(A5,B5) | ||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 15:53, 31 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant150
- db :SWISSREGULON
- Id :HOX(A5,B5).p2
- name :HOX(A5,B5)
- score :1.4757324038886515
- External refs:
- Internal refs:
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Sub Motif Members
