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NonredundantMotifs:150: Difference between revisions

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{{Known_motif
{{Known_motif
|PWM=PO;A;C;G;T!1;32.652369;49.645284;25.143821;168.016337!2;19.795402;71.148238;133.87144;50.642731!3;19.642589;185.480693;31.576872;38.757657!4;57.977116;143.143497;11.039453;63.297745!5;78.367393;124.77455;7.617958;64.69791!6;84.007147;74.630565;27.248819;89.57128!7;25.856554;137.227254;43.778716;68.595287!8;55.373057;67.438121;7.193718;145.452915!9;21.144388;114.767807;21.359345;118.186271!10;21.203892;237.724668;3.473775;13.055476!11;30.259889;178.841815;14.025013;52.331094!12;21.589623;152.35104;2.357525;99.159623!13;40.6671;191.691827;6.300925;36.797959!14;229.542383;12.397945;23.009236;10.508247!15;5.708053;13.103787;4.830926;251.815045!16;2.459556;24.515158;8.16236;240.320737!17;220.75601;20.512557;17.877866;16.311378!18;5.761396;87.846367;79.469502;102.380546!19;6.267044;54.124006;4.948551;210.11821!20;40.420281;80.953905;112.984996;41.098629!21;46.749459;111.127125;59.814251;57.766976!22;84.096114;19.79111;82.6323009999999;88.9382860000001!23;50.564299;128.678881;29.277327;66.937304!24;79.050257;70.612716;73.778101;52.016737!25;96.148222;115.562844;19.100366;44.646379!26;61.147827;123.780276;47.459665;43.070043!27;66.520138;107.600672;8.094193;93.242808!28;17.556557;109.96729;5.51005;142.423914!29;28.959766;177.763193;32.963672;35.77118!30;98.229717;75.055955;50.30221;51.869929
|PWM=PO;A;C;G;T!1;32.652369;49.645284;25.143821;168.016337!2;19.795402;71.148238;133.87144;50.642731!3;19.642589;185.480693;31.576872;38.757657!4;57.977116;143.143497;11.039453;63.297745!5;78.367393;124.77455;7.617958;64.69791!6;84.007147;74.630565;27.248819;89.57128!7;25.856554;137.227254;43.778716;68.595287!8;55.373057;67.438121;7.193718;145.452915!9;21.144388;114.767807;21.359345;118.186271!10;21.203892;237.724668;3.473775;13.055476!11;30.259889;178.841815;14.025013;52.331094!12;21.589623;152.35104;2.357525;99.159623!13;40.6671;191.691827;6.300925;36.797959!14;229.542383;12.397945;23.009236;10.508247!15;5.708053;13.103787;4.830926;251.815045!16;2.459556;24.515158;8.16236;240.320737!17;220.75601;20.512557;17.877866;16.311378!18;5.761396;87.846367;79.469502;102.380546!19;6.267044;54.124006;4.948551;210.11821!20;40.420281;80.953905;112.984996;41.098629!21;46.749459;111.127125;59.814251;57.766976!22;84.096114;19.79111;82.6323009999999;88.9382860000001!23;50.564299;128.678881;29.277327;66.937304!24;79.050257;70.612716;73.778101;52.016737!25;96.148222;115.562844;19.100366;44.646379!26;61.147827;123.780276;47.459665;43.070043!27;66.520138;107.600672;8.094193;93.242808!28;17.556557;109.96729;5.51005;142.423914!29;28.959766;177.763193;32.963672;35.77118!30;98.229717;75.055955;50.30221;51.869929
|entrez_gene_id=
|entrez_gene_id=3202,3215
|motif_cluster_2013_march_motif_members= /SWISSREGULON:HOX(A5,B5).p2
|motif_cluster_2013_march_motif_members= /SWISSREGULON:HOX(A5,B5).p2
|name=known150
|name=non-redundant150
|representative_motif_db=SWISSREGULON
|representative_motif_db=SWISSREGULON
|representative_motif_id=HOX(A5,B5).p2
|representative_motif_id=HOX(A5,B5).p2
|representative_motif_name=  
|representative_motif_name=HOX(A5,B5)
|score=1.4757324038886515
|score=1.4757324038886515
|uniprot_entry_name=
|uniprot_entry_name=HOX(A5,B5)
}}
}}
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Latest revision as of 15:53, 31 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant150
  • db :SWISSREGULON
  • Id :HOX(A5,B5).p2
  • name :HOX(A5,B5)
  • score :1.4757324038886515
  • External refs:
EntrezGene:3202
UniProt:3202

EntrezGene:3215
UniProt:3215

  • Internal refs:
EntrezGene:3202

EntrezGene:3215


Motif matrix
POACGT
132.65236949.64528425.143821168.016337
219.79540271.148238133.8714450.642731
319.642589185.48069331.57687238.757657
457.977116143.14349711.03945363.297745
578.367393124.774557.61795864.69791
684.00714774.63056527.24881989.57128
725.856554137.22725443.77871668.595287
855.37305767.4381217.193718145.452915
921.144388114.76780721.359345118.186271
1021.203892237.7246683.47377513.055476
1130.259889178.84181514.02501352.331094
1221.589623152.351042.35752599.159623
1340.6671191.6918276.30092536.797959
14229.54238312.39794523.00923610.508247
155.70805313.1037874.830926251.815045
162.45955624.5151588.16236240.320737
17220.7560120.51255717.87786616.311378
185.76139687.84636779.469502102.380546
196.26704454.1240064.948551210.11821
2040.42028180.953905112.98499641.098629
2146.749459111.12712559.81425157.766976
2284.09611419.7911182.632300999999988.9382860000001
2350.564299128.67888129.27732766.937304
2479.05025770.61271673.77810152.016737
2596.148222115.56284419.10036644.646379
2661.147827123.78027647.45966543.070043
2766.520138107.6006728.09419393.242808
2817.556557109.967295.51005142.423914
2928.959766177.76319332.96367235.77118
3098.22971775.05595550.3022151.869929

Sub Motif Members

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=NonredundantMotifs:150&oldid=2579626"