NonredundantMotifs:194: Difference between revisions
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{{Known_motif | {{Known_motif | ||
|PWM=PO;A;C;G;T!01;20.00;15.00;55.00;10.00!02;21.00;12.00;61.00;6.00!03;24.00;1.00;74.00;1.00!04;34.00;36.00;29.00;1.00!05;8.08;62.63;0.00;29.29!06;1.00;98.00;1.00;0.00!07;98.00;1.00;0.00;1.00!08;3.00;0.00;3.00;94.00!09;0.00;1.00;0.00;99.00!10;16.00;2.00;33.00;49.00!11;20.00;62.00;10.00;8.00!12;0.00;100.00;0.00;0.00 | |PWM=PO;A;C;G;T!01;20.00;15.00;55.00;10.00!02;21.00;12.00;61.00;6.00!03;24.00;1.00;74.00;1.00!04;34.00;36.00;29.00;1.00!05;8.08;62.63;0.00;29.29!06;1.00;98.00;1.00;0.00!07;98.00;1.00;0.00;1.00!08;3.00;0.00;3.00;94.00!09;0.00;1.00;0.00;99.00!10;16.00;2.00;33.00;49.00!11;20.00;62.00;10.00;8.00!12;0.00;100.00;0.00;0.00 | ||
|entrez_gene_id= | |entrez_gene_id=414065 | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:NANOG(mouse).p2 | |motif_cluster_2013_march_motif_members= /SWISSREGULON:NANOG(mouse).p2 | ||
|name=non-redundant194 | |name=non-redundant194 |
Latest revision as of 15:57, 31 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant194
- db :SWISSREGULON
- Id :NANOG(mouse).p2
- name :NANOG(mouse)
- score :0.05590746534872926
- External refs:
- Internal refs:
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Sub Motif Members