FFCP PHASE1:Hg19::chr10:13749260..13749280,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=55691|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=25491|TSSclassifier=N|UniProt=|association_with_transcript=476bp_to_ENST00000492155_5end|description=CAGE_peak_7_at_FRMD4A_5end|id=chr10:13749260..13749280,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0002541;4.32e-13;3!CL:0000840;6.48e-12;5!CL:0000764;4.55e-10;2!CL:0000558;4.55e-10;2!CL:0000047;1.04e-09;2!CL:0000990;5.99e-08;8|ontology_enrichment_celltype_v019_2=CL:0002541,5.80e-13,3;CL:0000840,6.06e-12,5;CL:0001029,6.06e-12,5;CL:0000764,4.98e-10,2;CL:0000765,4.98e-10,2;CL:0000050,4.98e-10,2;CL:0000038,4.98e-10,2;CL:0000558,4.98e-10,2;CL:0000547,4.98e-10,2;CL:0000549,4.98e-10,2;CL:0000550,4.98e-10,2;CL:0000552,4.98e-10,2;CL:0000990,5.73e-08,8|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!1.35e-24!115;UBERON:0001017!1.36e-09!82;UBERON:0004121!4.74e-09!169;UBERON:0005743!7.53e-09!86;UBERON:0000153!1.18e-08!129;UBERON:0007811!1.18e-08!129;UBERON:0000924!2.46e-08!173;UBERON:0006601!2.46e-08!173;UBERON:0001893!3.16e-08!34;UBERON:0002616!3.29e-08!59;UBERON:0000955!4.97e-08!69;UBERON:0006238!4.97e-08!69;UBERON:0000033!4.99e-08!123;UBERON:0002020!5.31e-08!34;UBERON:0003528!5.31e-08!34;UBERON:0000073!6.61e-08!94;UBERON:0001016!6.61e-08!94;UBERON:0001869!8.05e-08!32;UBERON:0001049!8.41e-08!57;UBERON:0005068!8.41e-08!57;UBERON:0006241!8.41e-08!57;UBERON:0007135!8.41e-08!57;UBERON:0002791!8.77e-08!33;UBERON:0000477!9.89e-08!286;UBERON:0000468!2.80e-07!659;UBERON:0000467!3.58e-07!625;UBERON:0004111!4.02e-07!241;UBERON:0003075!4.38e-07!86;UBERON:0007284!4.38e-07!86;UBERON:0000480!4.53e-07!626|ontology_enrichment_uberon_v019=UBERON:0003124;4.32e-13;3!UBERON:0000920;4.32e-13;3!UBERON:0000178;4.53e-10;15!UBERON:0000179;4.53e-10;15!UBERON:0000463;4.53e-10;15!UBERON:0002390;1.31e-07;32!UBERON:0002106;6.19e-07;3|ontology_enrichment_uberon_v019_2=UBERON:0000920,5.80e-13,3;UBERON:0000178,4.02e-10,15;UBERON:0000179,4.02e-10,15;UBERON:0000463,4.02e-10,15;UBERON:0002106,5.77e-07,3;UBERON:0004854,5.77e-07,3;UBERON:0009034,5.77e-07,3;UBERON:0002095,5.77e-07,3;UBERON:0004782,5.77e-07,3;UBERON:0003281,5.77e-07,3;UBERON:0009664,5.77e-07,3;UBERON:0002296,5.77e-07,3;UBERON:0005602,5.77e-07,3;UBERON:0001179,5.77e-07,3;UBERON:0006293,5.77e-07,3|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0.527533956456907,0,0,1.34465029290355,0.602694528023977,0,1.46379839637152,0.123121058076788,0,0.313454721478088,0.572471974262113,0,0.125542639594803,3.2857764471619,3.36612416744778,3.06972047123349,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0.670700859703636,0,0,0,0,0,0,0.567208902984407,0.221729397462564,0.263504357079378,0.916853528483988,0,0.741568885568859,4.54366351116557,3.65672448328461,3.32394901297163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0.25326102332916,0.132409180813219,0.286836620748814,0,0,0,0,0.311211035399766,0.134710672069688,0.163461903113459,0,0.576175924479999,0,0.312160076830321,0,0.149448680551801,0,0,0,0.204154171254893,0,0.103325781175765,0,0,0,0,0,0,0,0.438977620880838,0,0,0.226864366320042,0,0,0,0.300091096084402,0,0,0,0,0,0,0,0.161646056818812,0.355009592516614,0,0,0,0,0,0,0,0,0.207322110030741,0,0,0,0,1.38134921352481,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,1.96565443335525,0,0,0.122988438543114,0.514703430895577,0.109750285408626,0,0,0.277765335475589,0,0,0,0,0.352226082707465,0,0.462985512576611,0,0,0,0,0.702012795417713,0.445893486866185,0.93733833986777,0,0.141775097242386,0.0895585227028483,0.290633938513962,0,0,0,0.207328115540772,0,0.12624243342638,0,1.14596527667483,0,0,0.308482478109971,0.600686115687835,0,0.224262168690721,0,0.07333828582095,0.517086863031111,0,0,0.797814349754612,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.10833939483032,0,0,0,0,0.410952645100767,0,0,0,0,0,4.57370323600434,2.60279707715243,1.54657762555539,0,0.637938751653163,0,0,0,0,0,0.271265023699736,0.207970861530807,0.178428988797162,0,0,0.601892199455438,2.27407504055985,0,0,0,0.0868836144680828,0.783204629850962,0.686286847621712,0,0,0,0.303127571446259,0,0.604780586659361,0,0,0,0.128139149255701,0,0,0,0,0.532685175939381,0.246381468041427,0,0,0.120859449591622,0,0,0,0.182091168006717,0.131124414959424,0.451199612907412,0.0770153371044148,0,0,0.105551628892876,0,0,0.431831832204279,0,0,0,0,0.831076008928724,0.895499018888713,4.16593765627276,6.27445082459761,0,0,0,0.618246069886334,0,0,0,0,0,0.386682873168488,0,0,0.137836572484531,0,0,0.0852266274161009,0.0890320356467374,0,0,0,0,0,0,0.6970372701606,0.616067160352178,2.12922412126809,0,0,0.143124886741991,0,0.949138274156178,0.571890581771475,0.511795582622668,0,0.31820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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=55691 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25491 | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=476bp_to_ENST00000492155_5end | |||
|description=CAGE_peak_7_at_FRMD4A_5end | |||
|id=chr10:13749260..13749280,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002541;4.32e-13;3!CL:0000840;6.48e-12;5!CL:0000764;4.55e-10;2!CL:0000558;4.55e-10;2!CL:0000047;1.04e-09;2!CL:0000990;5.99e-08;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,5.80e-13,3;CL:0000840,6.06e-12,5;CL:0001029,6.06e-12,5;CL:0000764,4.98e-10,2;CL:0000765,4.98e-10,2;CL:0000050,4.98e-10,2;CL:0000038,4.98e-10,2;CL:0000558,4.98e-10,2;CL:0000547,4.98e-10,2;CL:0000549,4.98e-10,2;CL:0000550,4.98e-10,2;CL:0000552,4.98e-10,2;CL:0000990,5.73e-08,8 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.35e-24!115;UBERON:0001017!1.36e-09!82;UBERON:0004121!4.74e-09!169;UBERON:0005743!7.53e-09!86;UBERON:0000153!1.18e-08!129;UBERON:0007811!1.18e-08!129;UBERON:0000924!2.46e-08!173;UBERON:0006601!2.46e-08!173;UBERON:0001893!3.16e-08!34;UBERON:0002616!3.29e-08!59;UBERON:0000955!4.97e-08!69;UBERON:0006238!4.97e-08!69;UBERON:0000033!4.99e-08!123;UBERON:0002020!5.31e-08!34;UBERON:0003528!5.31e-08!34;UBERON:0000073!6.61e-08!94;UBERON:0001016!6.61e-08!94;UBERON:0001869!8.05e-08!32;UBERON:0001049!8.41e-08!57;UBERON:0005068!8.41e-08!57;UBERON:0006241!8.41e-08!57;UBERON:0007135!8.41e-08!57;UBERON:0002791!8.77e-08!33;UBERON:0000477!9.89e-08!286;UBERON:0000468!2.80e-07!659;UBERON:0000467!3.58e-07!625;UBERON:0004111!4.02e-07!241;UBERON:0003075!4.38e-07!86;UBERON:0007284!4.38e-07!86;UBERON:0000480!4.53e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0003124;4.32e-13;3!UBERON:0000920;4.32e-13;3!UBERON:0000178;4.53e-10;15!UBERON:0000179;4.53e-10;15!UBERON:0000463;4.53e-10;15!UBERON:0002390;1.31e-07;32!UBERON:0002106;6.19e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,5.80e-13,3;UBERON:0000178,4.02e-10,15;UBERON:0000179,4.02e-10,15;UBERON:0000463,4.02e-10,15;UBERON:0002106,5.77e-07,3;UBERON:0004854,5.77e-07,3;UBERON:0009034,5.77e-07,3;UBERON:0002095,5.77e-07,3;UBERON:0004782,5.77e-07,3;UBERON:0003281,5.77e-07,3;UBERON:0009664,5.77e-07,3;UBERON:0002296,5.77e-07,3;UBERON:0005602,5.77e-07,3;UBERON:0001179,5.77e-07,3;UBERON:0006293,5.77e-07,3 | |||
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| |||
|short_description=p7@FRMD4A | |||
}} |
Revision as of 12:31, 10 September 2013
Short description: | p7@FRMD4A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_FRMD4A_5end |
Coexpression cluster: | NA |
Association with transcript: | 476bp_to_ENST00000492155_5end |
EntrezGene: | FRMD4A |
HGNC: | 25491 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 5.80e-13 | 3 |
immature conventional dendritic cell | 6.06e-12 | 5 |
common dendritic progenitor | 6.06e-12 | 5 |
erythroid lineage cell | 4.98e-10 | 2 |
erythroblast | 4.98e-10 | 2 |
megakaryocyte-erythroid progenitor cell | 4.98e-10 | 2 |
erythroid progenitor cell | 4.98e-10 | 2 |
reticulocyte | 4.98e-10 | 2 |
proerythroblast | 4.98e-10 | 2 |
basophilic erythroblast | 4.98e-10 | 2 |
polychromatophilic erythroblast | 4.98e-10 | 2 |
orthochromatic erythroblast | 4.98e-10 | 2 |
conventional dendritic cell | 5.73e-08 | 8 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 5.80e-13 | 3 |
blood | 4.02e-10 | 15 |
haemolymphatic fluid | 4.02e-10 | 15 |
organism substance | 4.02e-10 | 15 |
spleen | 5.77e-07 | 3 |
gastrointestinal system mesentery | 5.77e-07 | 3 |
stomach region | 5.77e-07 | 3 |
mesentery | 5.77e-07 | 3 |
gastrointestinal system serosa | 5.77e-07 | 3 |
mesentery of stomach | 5.77e-07 | 3 |
gut mesentery | 5.77e-07 | 3 |
dorsal mesentery | 5.77e-07 | 3 |
dorsal mesogastrium | 5.77e-07 | 3 |
peritoneal cavity | 5.77e-07 | 3 |
spleen primordium | 5.77e-07 | 3 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.