FFCP PHASE1:Hg19::chr10:28287968..28288010,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=55130|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=25583|TSSclassifier=S|UniProt=Q5T2S8,A8K906|association_with_transcript=0bp_to_ENST00000305242,NM_018076,uc001itz.2_5end|coexpression_cluster_id=C199|description=CAGE_peak_1_at_ARMC4_5end|id=chr10:28287968..28288010,-|ontology_enrichment_celltype=CL:0000243!2.25e-07!15;CL:0000125!2.25e-07!15;CL:0000030!2.25e-07!15;CL:0000339!2.25e-07!15;CL:0002319!2.54e-07!25|ontology_enrichment_celltype_v019=CL:0002620;2.53e-08;23!CL:0002322;3.73e-08;5!CL:0000064;1.24e-07;3!CL:0000067;1.24e-07;3!CL:0005012;1.24e-07;3!CL:0002304;1.24e-07;3!CL:0002321;2.66e-07;15|ontology_enrichment_celltype_v019_2=CL:0002620,3.87e-08,23;CL:0000133,4.74e-08,59;CL:0002322,5.78e-08,5;CL:0000064,8.09e-08,3;CL:0000067,8.09e-08,3;CL:0005012,8.09e-08,3;CL:0002304,8.09e-08,3|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:14566!1.03e-09!239;DOID:162!2.35e-08!235;DOID:0050687!8.58e-08!143|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.68e-12!94;UBERON:0001016!1.68e-12!94;UBERON:0005743!4.37e-12!86;UBERON:0001017!4.74e-12!82;UBERON:0000955!2.23e-09!69;UBERON:0006238!2.23e-09!69;UBERON:0002346!1.30e-07!90;UBERON:0003075!2.67e-07!86;UBERON:0007284!2.67e-07!86|ontology_enrichment_uberon_v019=UBERON:0000488;1.83e-09;4!UBERON:0001778;1.24e-07;3!UBERON:0001775;1.24e-07;3!UBERON:0007625;8.20e-07;11|ontology_enrichment_uberon_v019_2=UBERON:0000488,9.82e-10,4;UBERON:0001778,8.09e-08,3;UBERON:0001775,8.09e-08,3;UBERON:0007625,7.33e-07,11|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0.662794751455832,0,0,0,0,1.84681587115182,0.204000691244253,0.626909442956176,0.85870796139317,0.136874425072884,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0.293600439334847,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289693037921647,0,0,3.02511414925017,1.33037638477538,1.93236528524877,0.0654895377488563,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0.56530794192401,0,0,0.208994966536811,1.03366703667732,0,1.67360306382335,0,0,0,0,0,1.51809538082936,0.44905874525234,1.23872628531654,0,0,0,0,0,0,0,0,0,0,0,0.560677600142307,0,0,0,0,0,0.151357427644931,0.576175924479999,0,0,0,0,0.117434498643765,0.323745888736263,0.702254033511242,0,0.491337269247072,0.103325781175765,0,0,0,0,0,0.500474079487857,0,0,0,0.150238058906597,0,1.07633781413317,0.85422955527427,0,1.20036438433761,1.13357782162283,6.95629458123199,5.21127197728451,0,0,3.5340728394176,0.552299391853796,0,1.77504796258307,1.20902517873168,1.52604533079439,0,0,0,0.487894824518382,3.84336328132307,2.44007280025989,2.48786532036889,1.00928340350251,1.45990943630332,0,1.28648187638577,0,0,0,1.0647612003586,0.674338760312407,1.68707720918437,0.441175890929576,0.653638332277218,0.474541238222193,1.34831308160164,0.784885860501384,1.15424147083917,0,0,0,0,0,0,0,0,0.122988438543114,1.54411029268673,0,0,0,0.277765335475589,0,0,1.44331342025273,1.15930404975077,0.117408694235822,0.288732895522148,0,0.570762456703795,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0.088048434013226,0,0,0,0,0,0,0,0,0,0,1.68196626518041,0.43596006883328,1.466765716419,0.129271715757778,0,0.845302752556,0,0,0,0,0,0,0,0,0,0,0,0,0,0.299918973546171,0,0,0,0.239624855491583,1.14861935834114,0,0,0.205476322550383,0.179060963239896,0,0,0,0,0,1.30139853857622,0,0.335032530668698,0,0,0,0,0.24538298343828,0.500170521059677,0.271265023699736,0,0,0.315404830067869,0,0.300946099727719,0,0,0,0,1.04260337361699,0,0.343143423810856,0,0,0.106727557803444,0,0,0,0,0,0,0,0.511707249066704,0,0,0,0,0,0,0.232420756919918,0,0,0,1.60740227430449,0.182091168006717,0.655622074797121,0,0.15403067420883,0,0,0.949964660035881,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0,0,0.650756789328606,0,0.54941678891006,0.495056999523528,0,0,0,0.096670718292122,0.462145851343933,0.15350367472613,0.137836572484531,0,0.580066775656914,0,0.534192213880424,0,0,0,0,0,0,0,0,0,0,0,0,0,0.632758849437452,0,0.255897791311334,0.42793898803392,0,0,0.539617372749944,0,0.353437207037059,0,0,0,0,0,0,1.77449884830381,0.989838023675989,0,0,0,0,0,0,0,0,0,0.430234056612155,0.0982490410131212,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,2.27653898714925,0.797131363644112,0,0,0,0,0,0,0,0,0,0,0,0,0.687010689511529,0.921722292925374,0.671028323677248,0.667396566847634,0.390776190804081,0,0,2.16364542780786,0,0,0,0,0.121360521749513,0,0,0,0,0,0.994147647766298,0.422008249231538,2.89402633059555,0,0,0,0,0,0.20453736500431,0,0.311039587661807,0.359473404589307,0,0,0.295930216910801,0,0,0,0.371072392647405,1.99613798001194,0,0,0,0,0,1.65471377237555,0,0,0,0,0.241192877250816,0,0,0,0.658156191461918,2.1787692703798,0.278847488557207,0.384751292518985,1.25336261431701,0,0,0,0,0.366390373607449,0,0,0,0,0,0,0,0,0,1.898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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=55130 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25583 | |||
|TSSclassifier=S | |||
|UniProt=Q5T2S8,A8K906 | |||
|association_with_transcript=0bp_to_ENST00000305242,NM_018076,uc001itz.2_5end | |||
|coexpression_cluster_id=C199 | |||
|description=CAGE_peak_1_at_ARMC4_5end | |||
|id=chr10:28287968..28288010,- | |||
|ontology_enrichment_celltype=CL:0000243!2.25e-07!15;CL:0000125!2.25e-07!15;CL:0000030!2.25e-07!15;CL:0000339!2.25e-07!15;CL:0002319!2.54e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0002620;2.53e-08;23!CL:0002322;3.73e-08;5!CL:0000064;1.24e-07;3!CL:0000067;1.24e-07;3!CL:0005012;1.24e-07;3!CL:0002304;1.24e-07;3!CL:0002321;2.66e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,3.87e-08,23;CL:0000133,4.74e-08,59;CL:0002322,5.78e-08,5;CL:0000064,8.09e-08,3;CL:0000067,8.09e-08,3;CL:0005012,8.09e-08,3;CL:0002304,8.09e-08,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!1.03e-09!239;DOID:162!2.35e-08!235;DOID:0050687!8.58e-08!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.68e-12!94;UBERON:0001016!1.68e-12!94;UBERON:0005743!4.37e-12!86;UBERON:0001017!4.74e-12!82;UBERON:0000955!2.23e-09!69;UBERON:0006238!2.23e-09!69;UBERON:0002346!1.30e-07!90;UBERON:0003075!2.67e-07!86;UBERON:0007284!2.67e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0000488;1.83e-09;4!UBERON:0001778;1.24e-07;3!UBERON:0001775;1.24e-07;3!UBERON:0007625;8.20e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000488,9.82e-10,4;UBERON:0001778,8.09e-08,3;UBERON:0001775,8.09e-08,3;UBERON:0007625,7.33e-07,11 | |||
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| |||
|short_description=p1@ARMC4 | |||
}} |
Revision as of 13:01, 10 September 2013
Short description: | p1@ARMC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_ARMC4_5end |
Coexpression cluster: | C199_glioblastoma_B_osteosarcoma_Fibroblast_heart_rhabdomyosarcoma_myxofibrosarcoma |
Association with transcript: | 0bp_to_ENST00000305242, NM_018076, uc001itz.2_5end |
EntrezGene: | ARMC4 |
HGNC: | 25583 |
UniProt: | Q5T2S8A8K906 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 3.87e-08 | 23 |
neurectodermal cell | 4.74e-08 | 59 |
embryonic stem cell | 5.78e-08 | 5 |
ciliated cell | 8.09e-08 | 3 |
ciliated epithelial cell | 8.09e-08 | 3 |
multi-ciliated epithelial cell | 8.09e-08 | 3 |
non-pigmented ciliary epithelial cell | 8.09e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
atypical epithelium | 9.82e-10 | 4 |
ciliary epithelium | 8.09e-08 | 3 |
ciliary body | 8.09e-08 | 3 |
pigment epithelium of eye | 7.33e-07 | 11 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.