FFCP PHASE1:Hg19::chr16:30772913..30772936,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=9810|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=16867|TSSclassifier=S|UniProt=A8K6K1,O75150|association_with_transcript=0bp_to_NM_001207033,NM_001207034,NM_014771_5end|coexpression_cluster_id=C19|description=CAGE_peak_3_at_RNF40_5end|id=chr16:30772913..30772936,+|ontology_enrichment_celltype=CL:0000012!1.43e-08!682;CL:0000548!1.04e-07!679;CL:0000004!1.04e-07!679;CL:0000255!1.04e-07!679|ontology_enrichment_celltype_v019=CL:0002188;8.96e-10;5!CL:1000746;4.17e-07;7!CL:1000612;4.17e-07;7|ontology_enrichment_celltype_v019_2=CL:0002188,1.00e-09,5;CL:1000746,4.51e-07,7;CL:1000612,4.51e-07,7|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:14566!2.81e-16!239;DOID:162!3.05e-16!235;DOID:0050687!3.95e-09!143;DOID:305!6.09e-09!106;DOID:0050686!2.05e-08!137|ontology_enrichment_disease_v019=DOID:8692;2.35e-07;31|ontology_enrichment_disease_v019_2=DOID:2531,2.81e-08,51;DOID:0060083,2.81e-08,51;DOID:1240,2.69e-07,39;DOID:8692,2.82e-07,31|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0002113;2.51e-07;24!UBERON:0011143;2.51e-07;24!UBERON:0000074;4.17e-07;7!UBERON:0001229;4.17e-07;7!UBERON:0002371;5.67e-07;12|ontology_enrichment_uberon_v019_2=UBERON:0010532,4.51e-07,7;UBERON:0000074,4.51e-07,7;UBERON:0001229,4.51e-07,7;UBERON:0001230,4.51e-07,7;UBERON:0003220,4.51e-07,7;UBERON:0005749,4.51e-07,7;UBERON:0004199,4.51e-07,7;UBERON:0004209,4.51e-07,7;UBERON:0004198,4.51e-07,7;UBERON:0002113,9.62e-07,26;UBERON:0003918,9.62e-07,26;UBERON:0011143,9.62e-07,26;UBERON:0005095,9.62e-07,26;UBERON:0007687,9.62e-07,26|phase1_expression=0.181678379270557,0.214100523890983,0,0,0.446961094427288,0.872338524100369,0,0,0.261185628199839,0.245733936501509,1.39560233594486,0,0,0,0,1.34465029290355,0.602694528023977,0,0.975865597581014,0.61560529038394,0.204000691244253,0,0,0.547497700291537,0.502170558379211,0.458480434487708,0.57470412614962,0.550975469195755,0,0,0,0,0,0,0,0,1.17440175733939,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0.645484683583826,0,0.188242339542605,0,0.224723484445085,0.306083892370903,0,0,0.659702600373432,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70692089026603,0,0,0,0,0,0.587237189370939,0.382273228125229,5.28685314316103,0.560508562981536,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34362744548263,0,0,0,0,0,0,0,0,0,0.403213486449465,0.534880391567015,0.579297615531196,0,0,0.12786256184353,0,0,0,0,0,0.0945348171640679,0,0.43917392846563,0.261958150995425,0,0,0,0.174129737299267,0,1.90792499444274,0,0.371457501329565,0,0,0,0.56530794192401,0,0,0.208994966536811,0,0,0,0.402829317109147,0,0,0.735326160691737,0,0,0.22452937262617,0,0,0.949265659568129,0.916008719652036,0,0,0,0,0,0,0,0,0,2.1349799145941,0.49333509683432,0,0.269421344139376,0.326923806226917,0.454072282934794,0,0.468642863667593,0.312160076830321,1.1409436430889,0,0.117434498643765,0.323745888736263,0,0,0.245668634623536,0.103325781175765,0,0.247266929278557,0.910161361938026,0,0,0,0,0,0,0,0,0.179389635688862,0.213557388818567,0.211931901159562,0,0,0.257640540045629,0.18611685633159,0.168776332241266,0.292311015483596,0,0,0,0,0.201504196455281,0.169560592310488,0.193260853163297,0.272746120590835,0,0.609868530647977,0.662648841607426,0.464775771478074,0.725627385107593,0.504641701751257,0.72995471815166,0,0,0,0,0,0.473227200159376,0.168584690078102,0,0.110293972732394,0.217879444092406,0,0.404493924480493,0.196221465125346,1.53898862778556,0,0,0.4115740113314,0,0,0,0,0.882926198829301,0,0,0,0,0,0.185176890317059,0.325808305310325,0,0,0.231860809950154,0,0.288732895522148,0,0.380508304469197,2.37061319387782,0.858486162094873,0,0,0.148631162288728,0,0.335964256397719,0.141775097242386,0.179117045405697,0,0.383382679165211,0,0.088048434013226,0,0,0,0.317489471460845,0,0,0,0.822619941626588,0.600686115687835,0.285826432630578,0.112131084345361,0,0.2933531432838,0.517086863031111,0,0,0,0,0.514414748524284,1.41849132023278,0.266422179016099,0.142977993658148,0.542621605391443,0,0,0,0.791951872933429,0.301439377059586,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0.224170287987055,0.788123040807709,0.215627574859517,0.128343036279748,2.54094624222463,0,1.54657762555539,0.502548796003046,0,0,0,0,0.12269149171914,0,0,0,0.178428988797162,0.157702415033935,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0.153461973288062,0,0.128139149255701,0,0.160853921143607,0,0,0.355123450626254,0,0,0,0.362578348774867,0.200506470303285,0.184161977871793,0.229628896329213,0,0.524497659837696,0.451199612907412,0.231046011313244,1.56869953835371,0,0.844413031143006,1.13733384070897,0.340187410553031,0,1.54227252690289,0.270946437543853,0,0.764628819135115,0,0.447749509444357,0,0,0,0.656029291399411,0.325378394664303,0,0.366277859273374,0.660075999364704,0.574265537996172,0,0,0,0.154048617114644,0.15350367472613,0.137836572484531,0.107420244868274,0,0,0.178064071293475,0.165284915360978,0,0,0,0.464845549297286,0.31481234683064,0.69703727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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=9810 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16867 | |||
|TSSclassifier=S | |||
|UniProt=A8K6K1,O75150 | |||
|association_with_transcript=0bp_to_NM_001207033,NM_001207034,NM_014771_5end | |||
|coexpression_cluster_id=C19 | |||
|description=CAGE_peak_3_at_RNF40_5end | |||
|id=chr16:30772913..30772936,+ | |||
|ontology_enrichment_celltype=CL:0000012!1.43e-08!682;CL:0000548!1.04e-07!679;CL:0000004!1.04e-07!679;CL:0000255!1.04e-07!679 | |||
|ontology_enrichment_celltype_v019=CL:0002188;8.96e-10;5!CL:1000746;4.17e-07;7!CL:1000612;4.17e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002188,1.00e-09,5;CL:1000746,4.51e-07,7;CL:1000612,4.51e-07,7 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!2.81e-16!239;DOID:162!3.05e-16!235;DOID:0050687!3.95e-09!143;DOID:305!6.09e-09!106;DOID:0050686!2.05e-08!137 | |||
|ontology_enrichment_disease_v019=DOID:8692;2.35e-07;31 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,2.81e-08,51;DOID:0060083,2.81e-08,51;DOID:1240,2.69e-07,39;DOID:8692,2.82e-07,31 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0002113;2.51e-07;24!UBERON:0011143;2.51e-07;24!UBERON:0000074;4.17e-07;7!UBERON:0001229;4.17e-07;7!UBERON:0002371;5.67e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010532,4.51e-07,7;UBERON:0000074,4.51e-07,7;UBERON:0001229,4.51e-07,7;UBERON:0001230,4.51e-07,7;UBERON:0003220,4.51e-07,7;UBERON:0005749,4.51e-07,7;UBERON:0004199,4.51e-07,7;UBERON:0004209,4.51e-07,7;UBERON:0004198,4.51e-07,7;UBERON:0002113,9.62e-07,26;UBERON:0003918,9.62e-07,26;UBERON:0011143,9.62e-07,26;UBERON:0005095,9.62e-07,26;UBERON:0007687,9.62e-07,26 | |||
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| |||
|short_description=p3@RNF40 | |||
}} |
Revision as of 10:11, 11 September 2013
Short description: | p3@RNF40 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_RNF40_5end |
Coexpression cluster: | C19_embryonic_testis_cord_chronic_CD14_NK_mesothelioma |
Association with transcript: | 0bp_to_NM_001207033, NM_001207034, NM_014771_5end |
EntrezGene: | RNF40 |
HGNC: | 16867 |
UniProt: | A8K6K1O75150 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
glomerular endothelial cell | 1.00e-09 | 5 |
glomerular cell | 4.51e-07 | 7 |
kidney corpuscule cell | 4.51e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
primitive nephron | 4.51e-07 | 7 |
renal glomerulus | 4.51e-07 | 7 |
renal corpuscle | 4.51e-07 | 7 |
glomerular capsule | 4.51e-07 | 7 |
metanephric mesenchyme | 4.51e-07 | 7 |
glomerular tuft | 4.51e-07 | 7 |
S-shaped body | 4.51e-07 | 7 |
renal vesicle | 4.51e-07 | 7 |
comma-shaped body | 4.51e-07 | 7 |
kidney | 9.62e-07 | 26 |
kidney mesenchyme | 9.62e-07 | 26 |
upper urinary tract | 9.62e-07 | 26 |
kidney rudiment | 9.62e-07 | 26 |
kidney field | 9.62e-07 | 26 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 2.81e-08 | 51 |
immune system cancer | 2.81e-08 | 51 |
leukemia | 2.69e-07 | 39 |
myeloid leukemia | 2.82e-07 | 31 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.