FFCP PHASE1:Hg19::chr17:15554931..15554938,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=10626|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=17241|TSSclassifier=S|UniProt=Q59EB2|association_with_transcript=321bp_to_uc002gor.1_5end|description=CAGE_peak_5_at_TRIM16_5end|id=chr17:15554931..15554938,-|ontology_enrichment_celltype=CL:0000066!4.37e-16!254;CL:0002076!2.14e-08!43;CL:0000220!2.36e-08!246;CL:0002321!5.13e-08!248;CL:0002368!4.35e-07!13|ontology_enrichment_celltype_v019=CL:0002577;5.25e-09;3!CL:0002159;1.19e-07;14!CL:0000349;1.72e-07;19!CL:0002368;9.21e-07;13|ontology_enrichment_celltype_v019_2=CL:0000066,4.30e-14,253;CL:0002577,6.99e-09,3;CL:0002159,5.82e-08,14;CL:0000349,1.47e-07,19|ontology_enrichment_development_v019=UBERON:0008947;3.69e-08;29|ontology_enrichment_disease=DOID:305!8.76e-08!106|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004119!1.22e-10!169;UBERON:0000925!1.22e-10!169;UBERON:0006595!1.22e-10!169;UBERON:0001004!2.07e-09!72;UBERON:0000077!1.00e-08!130;UBERON:0000065!2.48e-08!53;UBERON:0000072!6.55e-08!46;UBERON:0001007!7.84e-08!155;UBERON:0001555!7.84e-08!155;UBERON:0007026!7.84e-08!155;UBERON:0008947!2.39e-07!38;UBERON:0003258!2.39e-07!38;UBERON:0001737!3.43e-07!9;UBERON:0003104!3.50e-07!238;UBERON:0009142!3.50e-07!238;UBERON:0003102!4.05e-07!95;UBERON:0005631!5.37e-07!14;UBERON:0000158!5.37e-07!14|ontology_enrichment_uberon_v019=UBERON:0001737;8.44e-13;9!UBERON:0001557;8.44e-13;9!UBERON:0000072;1.77e-10;37!UBERON:0000065;3.10e-10;44!UBERON:0001987;7.97e-07;4|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.37e-12,9;UBERON:0000065,6.40e-12,54;UBERON:0008947,1.69e-11,38;UBERON:0003258,1.69e-11,38;UBERON:0000072,2.21e-11,47;UBERON:0004119,7.55e-11,160;UBERON:0000925,7.55e-11,160;UBERON:0006595,7.55e-11,160;UBERON:0005631,8.63e-11,14;UBERON:0000158,8.63e-11,14;UBERON:0001004,1.58e-09,74;UBERON:0003124,4.21e-09,7;UBERON:0001557,6.42e-09,19;UBERON:0001041,1.99e-07,87;UBERON:0004921,8.99e-07,118;UBERON:0001987,9.83e-07,4;UBERON:0004340,9.83e-07,4|phase1_expression=0.181678379270557,0.214100523890983,0.281908808191942,1.0007329835313,0,0,0,1.89515962028049,0,3.44027511102112,2.09340350391728,0.655324116390517,1.84636884759917,0.495065411840187,0,1.34465029290355,0,0.730310090387373,0.487932798790507,0.123121058076788,0.204000691244253,0,0,0,0.376627918784408,0,0,0,0,0,0,0.919421224478927,2.10844143144775,0.739508020333575,0,0,0,0,0,0,0,0,0,0.290796477559129,1.13362783106643,0,0,0.411167888021826,0,0,0.512321413058201,0,0,0,0,0,0.272906150057846,0.449446968890169,0.306083892370903,0.320929027076094,0,0,0.398927315243264,0.426224750532694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,0,0,0.511450247374121,0.722878304769133,0.50133791063589,0.434539556882471,0,0,0.283604451492204,0.221729397462564,0.527008714158756,0.0654895377488563,1.82147644146271,1.85392221392215,0,0.174129737299267,0,0,0,0,0.39752481473341,0,0,0,0,0,0.208994966536811,0,0,0.66944122552934,2.81980521976403,0,1.46437234528902,0.367663080345869,0,0.0892997282840798,0,0,0,0,0.366403487860815,0,0,1.3082821564276,0,0.633152558322899,0.529636723252875,0.573673241497627,0.354668382198357,2.24271040056923,2.1349799145941,0.49333509683432,0,0.538842688278752,0.163461903113459,0,0,0,0,0,0,0.117434498643765,0.161872944368132,0.140450806702248,0.61246251376468,0,0.206651562351531,0,0.247266929278557,0,0.718618141816238,0.336672227908132,0.500474079487857,0.554128230968366,0,0.30648779579902,0.600952235626387,0.340296549480063,0,0.213557388818567,0,0,0.103052529238439,0.257640540045629,0.37223371266318,0.337552664482532,0.876933046450788,0,0.368199594569197,0.646584227275248,0.355009592516614,0.201504196455281,0,0.386521706326594,1.63647672354501,1.43402297694502,0,0,0,0,0,0,3.12899064659632,0,1.38134921352481,0.464367928031979,0,1.0647612003586,1.85443159085912,1.44606617930089,1.32352767278873,2.39667388501647,1.18635309555548,0.943819157121151,0.784885860501384,1.15424147083917,0,0,0,0,0,0,0,0,0.245976877086227,0,1.97550513735526,1.1240175325762,0.502644862058154,0.277765335475589,0.325808305310325,1.03993478527958,0,0,0.821860859650752,0.144366447761074,0.462985512576611,0.570762456703795,0,0,0,0,0,1.87467667973554,1.17587489739202,0.425325291727159,0.358234090811393,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0.300343057843917,0,0.336393253036082,0,0.1466765716419,0.258543431515556,0,0,0,0,0,0,0,0.142977993658148,0.542621605391443,0.823240336780769,0.325736184293735,0,0,1.20575750823834,0.871533458600294,0.899756920638513,0,0,0,0.718874566474748,0,0,0.289562613335158,0,0.716243852959582,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.542530047399471,0.623912584592421,0.356857977594324,0.473107245101804,0.234282829985426,0,0,1.03473071292505,0,0,0.695068915744663,0.195801157462741,0,0,0,0,3.63753085735511,3.32870879020994,1.20956117331872,0.496215615637554,0.153461973288062,0.280660094433074,0.38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065869,0,0,0,1.33151354837103,0,0|short_description=p5@TRIM16}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=10626 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17241 | |||
|TSSclassifier=S | |||
|UniProt=Q59EB2 | |||
|association_with_transcript=321bp_to_uc002gor.1_5end | |||
|description=CAGE_peak_5_at_TRIM16_5end | |||
|id=chr17:15554931..15554938,- | |||
|ontology_enrichment_celltype=CL:0000066!4.37e-16!254;CL:0002076!2.14e-08!43;CL:0000220!2.36e-08!246;CL:0002321!5.13e-08!248;CL:0002368!4.35e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0002577;5.25e-09;3!CL:0002159;1.19e-07;14!CL:0000349;1.72e-07;19!CL:0002368;9.21e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.30e-14,253;CL:0002577,6.99e-09,3;CL:0002159,5.82e-08,14;CL:0000349,1.47e-07,19 | |||
|ontology_enrichment_development_v019=UBERON:0008947;3.69e-08;29 | |||
|ontology_enrichment_disease=DOID:305!8.76e-08!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!1.22e-10!169;UBERON:0000925!1.22e-10!169;UBERON:0006595!1.22e-10!169;UBERON:0001004!2.07e-09!72;UBERON:0000077!1.00e-08!130;UBERON:0000065!2.48e-08!53;UBERON:0000072!6.55e-08!46;UBERON:0001007!7.84e-08!155;UBERON:0001555!7.84e-08!155;UBERON:0007026!7.84e-08!155;UBERON:0008947!2.39e-07!38;UBERON:0003258!2.39e-07!38;UBERON:0001737!3.43e-07!9;UBERON:0003104!3.50e-07!238;UBERON:0009142!3.50e-07!238;UBERON:0003102!4.05e-07!95;UBERON:0005631!5.37e-07!14;UBERON:0000158!5.37e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;8.44e-13;9!UBERON:0001557;8.44e-13;9!UBERON:0000072;1.77e-10;37!UBERON:0000065;3.10e-10;44!UBERON:0001987;7.97e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.37e-12,9;UBERON:0000065,6.40e-12,54;UBERON:0008947,1.69e-11,38;UBERON:0003258,1.69e-11,38;UBERON:0000072,2.21e-11,47;UBERON:0004119,7.55e-11,160;UBERON:0000925,7.55e-11,160;UBERON:0006595,7.55e-11,160;UBERON:0005631,8.63e-11,14;UBERON:0000158,8.63e-11,14;UBERON:0001004,1.58e-09,74;UBERON:0003124,4.21e-09,7;UBERON:0001557,6.42e-09,19;UBERON:0001041,1.99e-07,87;UBERON:0004921,8.99e-07,118;UBERON:0001987,9.83e-07,4;UBERON:0004340,9.83e-07,4 | |||
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| |||
|short_description=p5@TRIM16 | |||
}} |
Revision as of 12:21, 11 September 2013
Short description: | p5@TRIM16 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_TRIM16_5end |
Coexpression cluster: | NA |
Association with transcript: | 321bp_to_uc002gor.1_5end |
EntrezGene: | TRIM16 |
HGNC: | 17241 |
UniProt: | Q59EB2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.30e-14 | 253 |
placental epithelial cell | 6.99e-09 | 3 |
general ecto-epithelial cell | 5.82e-08 | 14 |
extraembryonic cell | 1.47e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
larynx | 1.37e-12 | 9 |
respiratory tract | 6.40e-12 | 54 |
respiratory primordium | 1.69e-11 | 38 |
endoderm of foregut | 1.69e-11 | 38 |
segment of respiratory tract | 2.21e-11 | 47 |
endoderm-derived structure | 7.55e-11 | 160 |
endoderm | 7.55e-11 | 160 |
presumptive endoderm | 7.55e-11 | 160 |
extraembryonic membrane | 8.63e-11 | 14 |
membranous layer | 8.63e-11 | 14 |
respiratory system | 1.58e-09 | 74 |
chorion | 4.21e-09 | 7 |
upper respiratory tract | 6.42e-09 | 19 |
foregut | 1.99e-07 | 87 |
subdivision of digestive tract | 8.99e-07 | 118 |
placenta | 9.83e-07 | 4 |
allantois | 9.83e-07 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.