FFCP PHASE1:Hg19::chr17:25958204..25958254,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3965|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6570|TSSclassifier=S|UniProt=B4DWP7,F2Z2H7|association_with_transcript=0bp_to_ENST00000413914,ENST00000448970,ENST00000467111_5end|coexpression_cluster_id=C3297|description=CAGE_peak_1_at_LGALS9_5end|id=chr17:25958204..25958254,+|ontology_enrichment_celltype=CL:0000037!1.65e-55!172;CL:0000566!1.65e-55!172;CL:0002032!6.31e-52!165;CL:0000837!6.31e-52!165;CL:0000988!1.82e-48!182;CL:0000738!2.18e-48!140;CL:0000763!5.13e-42!112;CL:0000049!5.13e-42!112;CL:0002031!6.22e-40!124;CL:0002087!3.07e-38!119;CL:0000766!6.78e-35!76;CL:0000557!2.59e-32!71;CL:0000839!2.78e-31!70;CL:0002009!5.12e-30!65;CL:0002194!3.74e-29!63;CL:0000576!3.74e-29!63;CL:0000040!3.74e-29!63;CL:0000559!3.74e-29!63;CL:0002057!1.31e-26!42;CL:0000860!1.56e-22!45;CL:0000134!1.34e-09!358;CL:0000542!2.56e-09!53;CL:0000051!2.56e-09!53;CL:0000838!3.92e-09!52;CL:0002320!2.04e-08!365;CL:0000945!1.60e-07!24;CL:0000826!1.60e-07!24;CL:0002393!4.87e-07!9;CL:0002397!4.87e-07!9;CL:0000115!5.09e-07!35|ontology_enrichment_celltype_v019=CL:0000473;2.75e-20;39!CL:0000234;2.75e-20;39!CL:0000576;4.88e-20;48!CL:0000860;6.39e-20;33!CL:0002057;6.39e-20;33!CL:0000766;1.45e-17;69!CL:0000763;4.29e-14;100!CL:0000738;4.63e-12;136!CL:0002087;5.52e-12;104!CL:0000988;3.17e-09;177!CL:0000945;1.97e-07;24!CL:0000451;7.72e-07;10|ontology_enrichment_celltype_v019_2=CL:0000037,1.72e-61,168;CL:0002032,1.07e-57,161;CL:0000837,1.07e-57,161;CL:0000988,4.79e-54,177;CL:0000738,5.73e-54,136;CL:0000763,2.94e-48,108;CL:0000049,2.94e-48,108;CL:0002031,5.43e-45,120;CL:0002087,3.19e-43,115;CL:0000766,3.22e-41,72;CL:0000557,1.66e-38,67;CL:0000839,2.26e-37,66;CL:0002009,3.54e-36,61;CL:0002194,2.74e-35,59;CL:0000576,2.74e-35,59;CL:0000040,2.74e-35,59;CL:0000559,2.74e-35,59;CL:0000473,4.75e-32,48;CL:0000234,4.75e-32,48;CL:0000860,1.12e-27,42;CL:0002057,1.12e-27,42;CL:0000134,1.32e-10,354;CL:0000542,2.07e-09,53;CL:0000051,2.07e-09,53;CL:0002320,2.55e-09,361;CL:0000838,3.22e-09,52;CL:0000115,1.27e-07,36;CL:0000945,2.11e-07,24;CL:0000826,2.11e-07,24;CL:0002393,2.84e-07,9;CL:0002397,2.84e-07,9;CL:0000451,7.72e-07,10|ontology_enrichment_development_v019=CL:0002057;5.07e-20;42!CL:0000049;1.53e-13;108|ontology_enrichment_disease=DOID:8692!4.95e-07!31|ontology_enrichment_disease_v019=DOID:8692;4.17e-07;31|ontology_enrichment_disease_v019_2=DOID:8692,1.87e-07,31;DOID:1240,8.04e-07,39|ontology_enrichment_uberon=UBERON:0002193!6.82e-35!112;UBERON:0002390!1.38e-31!102;UBERON:0003061!1.38e-31!102;UBERON:0002371!7.56e-28!80;UBERON:0002405!7.88e-28!115;UBERON:0001474!4.68e-22!86;UBERON:0003081!5.93e-16!216;UBERON:0004765!3.02e-15!101;UBERON:0001434!3.02e-15!101;UBERON:0007023!2.42e-14!115;UBERON:0002384!5.83e-07!375|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002193,3.58e-41,108;UBERON:0002405,1.62e-38,93;UBERON:0002390,1.04e-37,98;UBERON:0003061,1.04e-37,98;UBERON:0002371,1.93e-33,76;UBERON:0001474,1.47e-27,82;UBERON:0004765,1.62e-21,90;UBERON:0003081,6.12e-20,203;UBERON:0001434,1.01e-17,100;UBERON:0007023,1.47e-14,114;UBERON:0002384,5.04e-08,371|phase1_expression=0.181678379270557,0,0.281908808191942,1.0007329835313,0.446961094427288,0.872338524100369,0,0,0,0.491467873003018,3.48900583986214,0.873765488520689,0.527533956456907,0,0.331397375727916,15.4634783683908,0.602694528023977,1.46062018077475,0.975865597581014,1.96993692922861,5.30401797235058,0.626909442956176,1.71741592278634,1.09499540058307,0.376627918784408,133.799873464663,100.080618539484,109.093142900759,251.753137183299,134.340289334024,288.577253861166,1.83884244895785,0,0,39.1984034936326,0.426507697462265,160.599440316161,150.132755712139,226.61522564126,180.770055306305,462.161538831204,352.39630862865,412.893634917601,175.350275968155,260.734401145279,245.980238044446,174.786635753075,227.37584207607,220.201229706419,297.186241268781,369.896060228021,389.959197086277,193.057581212506,212.364460899079,265.43591372491,180.712645960901,234.42638289969,186.07104512053,211.503969628294,233.957260738472,248.062804810028,283.342266860389,415.682262483481,365.274611206519,198.503119221951,183.832812799929,237.91809911631,250.243670595716,320.190511910004,398.541530033889,210.073627413779,264.423342639071,266.144867837784,361.24653959342,517.266261814951,315.326602844597,286.999652579295,352.765521284698,202.674964825018,369.661528632399,634.146366910699,353.272473380802,107.357709121407,141.449900316892,140.542462110442,134.42002010845,142.941367371856,131.043556309622,176.498981033558,157.418869498335,137.180325555377,152.094432047073,111.623782612567,158.605594294831,116.585781100159,128.531433370238,28.326206896392,29.0827964434382,36.8026683209121,66.7074116608806,41.7180501290996,41.1899590989218,23.3792074089494,62.9469081401231,79.8382009256809,90.8288967792847,64.7221234398387,67.3760341757051,74.78412484693,73.3393054532395,49.190303165881,54.4829801181899,31.881611079843,27.8242461213302,25.0885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.8343603723352,0.169927114687817,184.490430994453,159.533272734604,329.505991084491,7.1421575442263,0.352894871715692,6.25882660175512,60.6179202244609,15.5967956357544,43.5752332780412,0,20.3294555670835,2.18175345170189,42.8511740817474,2.97596014533401,4.15958065768276,0,0,0.109265571963696,0,0.101988829741982,0,0.0918948995348449,0,16.0650840222668,3.7514978221865,18.2417276680931,35.9946825599395,22.816036063405,9.76064169001335,75.8273801474712,56.9845877235976,1.34558235096736,12.347548705964,8.08468755832877,10.6681206469511,12.3203988390701,68.6990940748793,44.324322932674,10.9777917660184,41.9226833346519,0.426909383510862,0,12.8450039012419,16.4248659682418,17.4805265181499,4.88275413978886,6.65756774185513,92.5859450518721,242.670348673547|short_description=p1@LGALS9}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=3965 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6570 | |||
|TSSclassifier=S | |||
|UniProt=B4DWP7,F2Z2H7 | |||
|association_with_transcript=0bp_to_ENST00000413914,ENST00000448970,ENST00000467111_5end | |||
|coexpression_cluster_id=C3297 | |||
|description=CAGE_peak_1_at_LGALS9_5end | |||
|id=chr17:25958204..25958254,+ | |||
|ontology_enrichment_celltype=CL:0000037!1.65e-55!172;CL:0000566!1.65e-55!172;CL:0002032!6.31e-52!165;CL:0000837!6.31e-52!165;CL:0000988!1.82e-48!182;CL:0000738!2.18e-48!140;CL:0000763!5.13e-42!112;CL:0000049!5.13e-42!112;CL:0002031!6.22e-40!124;CL:0002087!3.07e-38!119;CL:0000766!6.78e-35!76;CL:0000557!2.59e-32!71;CL:0000839!2.78e-31!70;CL:0002009!5.12e-30!65;CL:0002194!3.74e-29!63;CL:0000576!3.74e-29!63;CL:0000040!3.74e-29!63;CL:0000559!3.74e-29!63;CL:0002057!1.31e-26!42;CL:0000860!1.56e-22!45;CL:0000134!1.34e-09!358;CL:0000542!2.56e-09!53;CL:0000051!2.56e-09!53;CL:0000838!3.92e-09!52;CL:0002320!2.04e-08!365;CL:0000945!1.60e-07!24;CL:0000826!1.60e-07!24;CL:0002393!4.87e-07!9;CL:0002397!4.87e-07!9;CL:0000115!5.09e-07!35 | |||
|ontology_enrichment_celltype_v019=CL:0000473;2.75e-20;39!CL:0000234;2.75e-20;39!CL:0000576;4.88e-20;48!CL:0000860;6.39e-20;33!CL:0002057;6.39e-20;33!CL:0000766;1.45e-17;69!CL:0000763;4.29e-14;100!CL:0000738;4.63e-12;136!CL:0002087;5.52e-12;104!CL:0000988;3.17e-09;177!CL:0000945;1.97e-07;24!CL:0000451;7.72e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.72e-61,168;CL:0002032,1.07e-57,161;CL:0000837,1.07e-57,161;CL:0000988,4.79e-54,177;CL:0000738,5.73e-54,136;CL:0000763,2.94e-48,108;CL:0000049,2.94e-48,108;CL:0002031,5.43e-45,120;CL:0002087,3.19e-43,115;CL:0000766,3.22e-41,72;CL:0000557,1.66e-38,67;CL:0000839,2.26e-37,66;CL:0002009,3.54e-36,61;CL:0002194,2.74e-35,59;CL:0000576,2.74e-35,59;CL:0000040,2.74e-35,59;CL:0000559,2.74e-35,59;CL:0000473,4.75e-32,48;CL:0000234,4.75e-32,48;CL:0000860,1.12e-27,42;CL:0002057,1.12e-27,42;CL:0000134,1.32e-10,354;CL:0000542,2.07e-09,53;CL:0000051,2.07e-09,53;CL:0002320,2.55e-09,361;CL:0000838,3.22e-09,52;CL:0000115,1.27e-07,36;CL:0000945,2.11e-07,24;CL:0000826,2.11e-07,24;CL:0002393,2.84e-07,9;CL:0002397,2.84e-07,9;CL:0000451,7.72e-07,10 | |||
|ontology_enrichment_development_v019=CL:0002057;5.07e-20;42!CL:0000049;1.53e-13;108 | |||
|ontology_enrichment_disease=DOID:8692!4.95e-07!31 | |||
|ontology_enrichment_disease_v019=DOID:8692;4.17e-07;31 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,1.87e-07,31;DOID:1240,8.04e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0002193!6.82e-35!112;UBERON:0002390!1.38e-31!102;UBERON:0003061!1.38e-31!102;UBERON:0002371!7.56e-28!80;UBERON:0002405!7.88e-28!115;UBERON:0001474!4.68e-22!86;UBERON:0003081!5.93e-16!216;UBERON:0004765!3.02e-15!101;UBERON:0001434!3.02e-15!101;UBERON:0007023!2.42e-14!115;UBERON:0002384!5.83e-07!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,3.58e-41,108;UBERON:0002405,1.62e-38,93;UBERON:0002390,1.04e-37,98;UBERON:0003061,1.04e-37,98;UBERON:0002371,1.93e-33,76;UBERON:0001474,1.47e-27,82;UBERON:0004765,1.62e-21,90;UBERON:0003081,6.12e-20,203;UBERON:0001434,1.01e-17,100;UBERON:0007023,1.47e-14,114;UBERON:0002384,5.04e-08,371 | |||
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| |||
|short_description=p1@LGALS9 | |||
}} |
Revision as of 12:41, 11 September 2013
Short description: | p1@LGALS9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_LGALS9_5end |
Coexpression cluster: | C3297_Monocytederived_CD14CD16_CD14_Macrophage_Dendritic_migratory_splenic |
Association with transcript: | 0bp_to_ENST00000413914, ENST00000448970, ENST00000467111_5end |
EntrezGene: | LGALS9 |
HGNC: | 6570 |
UniProt: | B4DWP7F2Z2H7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 3.58e-41 | 108 |
immune system | 1.62e-38 | 93 |
hematopoietic system | 1.04e-37 | 98 |
blood island | 1.04e-37 | 98 |
bone marrow | 1.93e-33 | 76 |
bone element | 1.47e-27 | 82 |
skeletal element | 1.62e-21 | 90 |
lateral plate mesoderm | 6.12e-20 | 203 |
skeletal system | 1.01e-17 | 100 |
adult organism | 1.47e-14 | 114 |
connective tissue | 5.04e-08 | 371 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 1.87e-07 | 31 |
leukemia | 8.04e-07 | 39 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.